Difference between revisions of "YbdO"
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''ybdO'' [http://www.ncbi.nlm.nih.gov/pubmed/15033535 PubMed] |
| − | * ''' | + | * '''[[Sigma factor]]:''' [[SigD]] [http://www.ncbi.nlm.nih.gov/pubmed/15033535 PubMed] |
| − | * '''Regulation:''' repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed | + | * '''Regulation:''' |
| + | ** repressed during logarithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/pubmed/18840696 PubMed] | ||
| + | ** repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/pubmed/18840696 PubMed] | ||
| − | * '''Additional information:''' | + | * '''Regulatory mechanism:''' |
| + | |||
| + | * '''Additional information:''' | ||
=Biological materials = | =Biological materials = | ||
Revision as of 20:27, 6 July 2009
- Description: unknown
| Gene name | ybdO |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| MW, pI | 44 kDa, 5.365 |
| Gene length, protein length | 1182 bp, 394 aa |
| Immediate neighbours | ybdN, ybxG |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU02050
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: extracellular (signal peptide) PubMed
Database entries
- Structure:
- Swiss prot entry: O31437
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: ybdO PubMed
- Regulation:
- repressed during logarithmic growth (AbrB) PubMed
- repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Birgit Voigt, Haike Antelmann, Dirk Albrecht, Armin Ehrenreich, Karl-Heinz Maurer, Stefan Evers, Gerhard Gottschalk, Jan Maarten van Dijl, Thomas Schweder, Michael Hecker
Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis.
J Mol Microbiol Biotechnol: 2009, 16(1-2);53-68
[PubMed:18957862]
[WorldCat.org]
[DOI]
(I p)
Ulrike Mäder, Georg Homuth, Christian Scharf, Knut Büttner, Rüdiger Bode, Michael Hecker
Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability.
J Bacteriol: 2002, 184(15);4288-95
[PubMed:12107147]
[WorldCat.org]
[DOI]
(P p)
