Difference between revisions of "RbsD"

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=== Basic information/ Evolution ===
 
=== Basic information/ Evolution ===
  
* '''Catalyzed reaction/ biological activity:'''  
+
* '''Catalyzed reaction/ biological activity:''' Beta-D-ribopyranose = beta-D-ribofuranose (according to Swiss-Prot)
  
 
* '''Protein family:''' RbsD subfamily (according to Swiss-Prot)
 
* '''Protein family:''' RbsD subfamily (according to Swiss-Prot)

Revision as of 15:20, 24 May 2009

  • Description: ribose ABC transporter (membrane protein)

Gene name rbsD
Synonyms
Essential no
Product ribose ABC transporter (membrane protein)
Function ribose uptake
MW, pI 14 kDa, 4.987
Gene length, protein length 393 bp, 131 aa
Immediate neighbours rbsK, rbsA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
RbsD context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Beta-D-ribopyranose = beta-D-ribofuranose (according to Swiss-Prot)
  • Protein family: RbsD subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cytoplasm (according to Swiss-Prot)

Database entries

  • Structure: 1OGD (complex with D-ribose)
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Kim MS, Shin J, Lee W, Lee HS, Oh BH. (2003) Crystal structures of RbsD leading to the identification of cytoplasmic sugar-binding proteins with a novel folding architecture. J Biol Chem. Jul 25;278(30): 28173-80. PubMed
  2. Woodson K, Devine KM. (1994) Analysis of a ribose transport operon from Bacillus subtilis. Microbiology. Aug;140 ( Pt 8): 1829-38. PubMed
  3. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed