Difference between revisions of "YlnF"

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(Expression and regulation)
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* '''[[Sigma factor]]:''' [[SigA]]
 
* '''[[Sigma factor]]:''' [[SigA]]
  
* '''Regulation:''' repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]
+
* '''Regulation:''' repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed], repressed in the presence of cysteine ([[CymR]])
  
* '''Regulatory mechanism:'''  
+
* '''Regulatory mechanism:''' [[CymR]]: transcription repression, [[S-box Element]]: transcriptional antitermination
  
 
* '''Additional information:'''
 
* '''Additional information:'''

Revision as of 18:57, 2 May 2009

  • Description: probably precorrin-2 dehydrogenase

Gene name ylnF
Synonyms
Essential no
Product probably precorrin-2 dehydrogenase
Function siroheme biosynthesis , sulfite reduction
MW, pI 17 kDa, 9.238
Gene length, protein length 486 bp, 162 aa
Immediate neighbours ylnE, yloA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YlnF context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: repressed by casamino acids PubMed, repressed in the presence of cysteine (CymR)
  • Regulatory mechanism: CymR: transcription repression, S-box Element: transcriptional antitermination
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Mäder et al. (2002) Transcriptome and Proteome Analysis of Bacillus subtilis Gene Expression Modulated by Amino Acid Availability. J. Bacteriol 184: 1844288-4295 PubMed
  2. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed