Difference between revisions of "Sandbox"
| Line 1: | Line 1: | ||
| − | * '''Description:''' | + | * '''Description:''' write here <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''mtlD'' |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''mtlB '' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || mannitol-1-phosphate dehydrogenase (EC 1.1.1.17) |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || unknown |
|- | |- | ||
| − | + | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 40 kDa, 6.291 | |
| − | |style="background:#ABCDEF;" align="center"|''' | ||
|- | |- | ||
| − | |style="background:# | + | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1098 bp, 366 aa |
| − | | | ||
|- | |- | ||
| − | |colspan="2" | '''Genetic context''' <br/> [[Image: | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mtlA]]'', ''[[ycsA]]'' |
| + | |- | ||
| + | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/mtlD_nucleotide.txt Gene sequence (+200bp) ]''' | ||
| + | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/mtlD_protein.txt Protein sequence]''' | ||
| + | |- | ||
| + | |colspan="2" style="background:#FAF8CC;color:#FF0000" align="center" | '''Caution: The sequence for this gene in SubtiList contains errors | ||
| + | |- | ||
| + | |colspan="2" | '''Genetic context''' <br/> [[Image:mtlD_context.gif]] | ||
|- | |- | ||
|} | |} | ||
| Line 28: | Line 33: | ||
<br/><br/> | <br/><br/> | ||
| − | |||
=The gene= | =The gene= | ||
| Line 39: | Line 43: | ||
=== Database entries === | === Database entries === | ||
| − | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ | + | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/mtlD.html] |
| − | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+ | + | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11216] |
| − | |||
| − | |||
=== Additional information=== | === Additional information=== | ||
| − | + | =The protein= | |
| + | |||
| + | === Basic information/ Evolution === | ||
| + | |||
| + | * '''Catalyzed reaction/ biological activity:''' | ||
| + | |||
| + | * '''Protein family:''' | ||
| + | |||
| + | * '''Paralogous protein(s):''' | ||
| + | |||
| + | === Extended information on the protein === | ||
| + | |||
| + | * '''Kinetic information:''' | ||
| + | |||
| + | * '''Domains:''' | ||
| + | |||
| + | * '''Modification:''' | ||
| + | |||
| + | * '''Cofactor(s):''' | ||
| + | |||
| + | * '''Effectors of protein activity:''' | ||
| + | |||
| + | * '''Interactions:''' | ||
| + | |||
| + | * '''Localization:''' | ||
| + | |||
| + | === Database entries === | ||
| + | |||
| + | * '''Structure:''' | ||
| + | |||
| + | * '''Swiss prot entry:''' | ||
| + | |||
| + | * '''KEGG entry:''' | ||
| + | |||
| + | * '''E.C. number:''' | ||
| + | |||
| + | === Additional information=== | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''[[mtlA]]-[[mtlD]]'' |
* '''Sigma factor:''' | * '''Sigma factor:''' | ||
| Line 60: | Line 98: | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| − | * '''Additional information:''' | + | * '''Additional information:''' |
=Biological materials = | =Biological materials = | ||
Revision as of 08:42, 27 February 2009
- Description: write here
| Gene name | mtlD |
| Synonyms | mtlB |
| Essential | no |
| Product | mannitol-1-phosphate dehydrogenase (EC 1.1.1.17) |
| Function | unknown |
| MW, pI | 40 kDa, 6.291 |
| Gene length, protein length | 1098 bp, 366 aa |
| Immediate neighbours | mtlA, ycsA |
| Gene sequence (+200bp) | Protein sequence |
| Caution: The sequence for this gene in SubtiList contains errors | |
Genetic context 
| |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- Swiss prot entry:
- KEGG entry:
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
- Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
