Difference between revisions of "YrvJ"

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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1554 bp, 518 aa  
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1554 bp, 518 aa  
 
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|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yrzK]]'', ''[[yrvI]]''
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yrzK]]'', ''[[dtd]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU27580 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU27580 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU27580 DNA_with_flanks]
 
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU27580 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU27580 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU27580 DNA_with_flanks]

Revision as of 20:27, 8 March 2014

  • Description: similar to N-acetylmuramoyl-L-alanine amidase

Gene name yrvJ
Synonyms
Essential no
Product peptidoglycan hydrolase
Function cell wall metabolism
Gene expression levels in SubtiExpress: yrvJ
MW, pI 55 kDa, 5.192
Gene length, protein length 1554 bp, 518 aa
Immediate neighbours yrzK, dtd
Sequences Protein DNA DNA_with_flanks
Genetic context
YrvJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YrvJ expression.png
























Categories containing this gene/protein

cell wall/ other

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU27580

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Hydrolyzes the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides (according to Swiss-Prot)
  • Protein family: N-acetylmuramoyl-L-alanine amidase 3 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References