Difference between revisions of "YfjO"

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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU08020&redirect=T BSU08020]
  
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yfjPO.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yfjPO.html]
Line 92: Line 93:
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU08020&redirect=T BSU08020]
  
 
* '''Structure:'''
 
* '''Structure:'''

Revision as of 13:13, 2 April 2014

  • Description: similar to RNA methyltransferase

Gene name yfjO
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yfjO
MW, pI 51 kDa, 9.807
Gene length, protein length 1398 bp, 466 aa
Immediate neighbours yfjP, yfzA
Sequences Protein DNA DNA_with_flanks
Genetic context
YfjO context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YfjO expression.png

























Categories containing this gene/protein

translation

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU08020

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: TRAM domain (according to Swiss-Prot)
  • Paralogous protein(s): RlmCD

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s): contains an iron-sulfur cluster
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Benoit Desmolaize, Céline Fabret, Damien Brégeon, Simon Rose, Henri Grosjean, Stephen Douthwaite
A single methyltransferase YefA (RlmCD) catalyses both m5U747 and m5U1939 modifications in Bacillus subtilis 23S rRNA.
Nucleic Acids Res: 2011, 39(21);9368-75
[PubMed:21824914] [WorldCat.org] [DOI] (I p)