Difference between revisions of "PdaA"

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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=pdaA_869559_870350_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:pdaA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07980]]
 
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Revision as of 12:47, 16 May 2013

  • Description: polysaccharide deacetylase, required for germination

Gene name pdaA
Synonyms yfjS
Essential no
Product polysaccharide deacetylase
Function germination
Gene expression levels in SubtiExpress: pdaA
MW, pI 29 kDa, 7.318
Gene length, protein length 789 bp, 263 aa
Immediate neighbours yfjT, yfjR
Sequences Protein DNA DNA_with_flanks
Genetic context
YfjS context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
PdaA expression.png
























Categories containing this gene/protein

germination

This gene is a member of the following regulons

SigG regulon

The gene

Basic information

  • Locus tag: BSU07980

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: polysaccharide deacetylase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: expressed late during sporulation in the forespore (SigG) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References