Difference between revisions of "RpsF"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ssbA]]'', ''[[yyaF]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ssbA]]'', ''[[yyaF]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU40910 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU40910 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU40910 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU40910 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU40910 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU40910 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:rpsF_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:rpsF_context.gif]]

Revision as of 11:46, 14 May 2013

Gene name rpsF
Synonyms
Essential no PubMed
Product ribosomal protein S6 (BS9)
Function translation
Gene expression levels in SubtiExpress: rpsF
Interactions involving this protein in SubtInteract: RpsF
MW, pI 10 kDa, 4.993
Gene length, protein length 285 bp, 95 aa
Immediate neighbours ssbA, yyaF
Sequences Protein DNA DNA_with_flanks
Genetic context
RpsF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RpsF expression.png















Categories containing this gene/protein

translation

This gene is a member of the following regulons

ComK regulon, stringent response

The gene

Basic information

  • Locus tag: BSU40910

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 3R3T (from Bacillus anthracis, 71% identity, 97% similarity)
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
    • ComK: transcription activation PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Matthew A Lauber, William E Running, James P Reilly
B. subtilis ribosomal proteins: structural homology and post-translational modifications.
J Proteome Res: 2009, 8(9);4193-206
[PubMed:19653700] [WorldCat.org] [DOI] (P p)

Cordula Lindner, Reindert Nijland, Mariska van Hartskamp, Sierd Bron, Leendert W Hamoen, Oscar P Kuipers
Differential expression of two paralogous genes of Bacillus subtilis encoding single-stranded DNA binding protein.
J Bacteriol: 2004, 186(4);1097-105
[PubMed:14762004] [WorldCat.org] [DOI] (P p)

Christine Eymann, Georg Homuth, Christian Scharf, Michael Hecker
Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis.
J Bacteriol: 2002, 184(9);2500-20
[PubMed:11948165] [WorldCat.org] [DOI] (P p)

Mitsuo Ogura, Hirotake Yamaguchi, Kazuo Kobayashi, Naotake Ogasawara, Yasutaro Fujita, Teruo Tanaka
Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK.
J Bacteriol: 2002, 184(9);2344-51
[PubMed:11948146] [WorldCat.org] [DOI] (P p)