Difference between revisions of "YplP"

From SubtiWiki
Jump to: navigation, search
Line 24: Line 24:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ilvA]]'', ''[[yplQ]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ilvA]]'', ''[[yplQ]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU21780 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU21780 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU21780 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU21780 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU21780 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU21780 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yplP_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yplP_context.gif]]

Revision as of 10:31, 14 May 2013

Gene name yplP
Synonyms
Essential no
Product transcriptional activator (for SigL-dependent promoter)
Function required for survival at low temperatures
Gene expression levels in SubtiExpress: yplP
Interactions involving this protein in SubtInteract: YplP
MW, pI 37 kDa, 9.295
Gene length, protein length 993 bp, 331 aa
Immediate neighbours ilvA, yplQ
Sequences Protein DNA DNA_with_flanks
Genetic context
YplP context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YplP expression.png
























Categories containing this gene/protein

transcription factors and their control, cold stress proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU21780

Phenotypes of a mutant

The mutant is cold-sensitive PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
    • induced by cold shock (9-fold) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Frank Wiegeshoff, Carsten L Beckering, Michel Debarbouille, Mohamed A Marahiel
Sigma L is important for cold shock adaptation of Bacillus subtilis.
J Bacteriol: 2006, 188(8);3130-3
[PubMed:16585774] [WorldCat.org] [DOI] (P p)

Carsten L Beckering, Leif Steil, Michael H W Weber, Uwe Völker, Mohamed A Marahiel
Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis.
J Bacteriol: 2002, 184(22);6395-402
[PubMed:12399512] [WorldCat.org] [DOI] (P p)