Difference between revisions of "AppF"

From SubtiWiki
Jump to: navigation, search
Line 25: Line 25:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[appD]]'', ''[[appA/1]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[appD]]'', ''[[appA/1]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU11370 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU11370 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU11370 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU11370 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU11370 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU11370 DNA_with_flanks]
 
|-
 
|-
 
|-
 
|-

Revision as of 09:54, 14 May 2013

Gene name appF
Synonyms
Essential no
Product oligopeptide ABC transporter (ATP-binding protein))
Function uptake of oligopeptides
Gene expression levels in SubtiExpress: appF
Interactions involving this protein in SubtInteract: AppF
Metabolic function and regulation of this protein in SubtiPathways:
Alternative nitrogen sources
MW, pI 36 kDa, 9.645
Gene length, protein length 987 bp, 329 aa
Immediate neighbours appD, appA/1
Sequences Protein DNA DNA_with_flanks
Genetic context
AppF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
AppF expression.png
























Categories containing this gene/protein

ABC transporters, utilization of nitrogen sources other than amino acids, membrane proteins

This gene is a member of the following regulons

CodY regulon, ScoC regulon

The gene

Basic information

  • Locus tag: BSU11370

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • repressed during exponential growth (ScoC) PubMed
    • repressed during growth in the presence of branched chain amino acids (CodY) PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References