Difference between revisions of "PdxK"
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of pyridoxal phosphate | |style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of pyridoxal phosphate | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38020 pdxK] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 28 kDa, 4.922 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 28 kDa, 4.922 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywzG]]'', ''[[ywdA]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywzG]]'', ''[[ywdA]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38020 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38020 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38020 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:thiD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:thiD_context.gif]] | ||
Revision as of 14:09, 13 May 2013
- Description: pyridoxine, pyridoxal, and pyridoxamine kinase
| Gene name | pdxK |
| Synonyms | ywdB, ipa-52r, thiD |
| Essential | no |
| Product | pyridoxine, pyridoxal, and pyridoxamine kinase |
| Function | biosynthesis of pyridoxal phosphate |
| Gene expression levels in SubtiExpress: pdxK | |
| MW, pI | 28 kDa, 4.922 |
| Gene length, protein length | 813 bp, 271 aa |
| Immediate neighbours | ywzG, ywdA |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU38020
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: ATP + 4-amino-2-methyl-5-phosphomethylpyrimidine = ADP + 4-amino-2-methyl-5-diphosphomethylpyrimidine (according to Swiss-Prot)
- Protein family: thiD family (according to Swiss-Prot)
- Paralogous protein(s): ThiD
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 2IB5
- UniProt: P39610
- KEGG entry: [3]
- E.C. number: 2.7.4.7
Additional information
- subject to Clp-dependent proteolysis upon glucose starvation PubMed
Expression and regulation
- Operon: pdxK PubMed
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information: subject to Clp-dependent proteolysis upon glucose starvation PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
