Difference between revisions of "PdaA"
Raphael2215 (talk | contribs) |
|||
| Line 13: | Line 13: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || germination | |style="background:#ABCDEF;" align="center"|'''Function''' || germination | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07980 pdaA] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 29 kDa, 7.318 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 29 kDa, 7.318 | ||
| Line 21: | Line 21: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfjT]]'', ''[[yfjR]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfjT]]'', ''[[yfjR]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07980 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07980 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07980 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yfjS_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yfjS_context.gif]] | ||
Revision as of 12:22, 13 May 2013
- Description: polysaccharide deacetylase, required for germination
| Gene name | pdaA |
| Synonyms | yfjS |
| Essential | no |
| Product | polysaccharide deacetylase |
| Function | germination |
| Gene expression levels in SubtiExpress: pdaA | |
| MW, pI | 29 kDa, 7.318 |
| Gene length, protein length | 789 bp, 263 aa |
| Immediate neighbours | yfjT, yfjR |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU07980
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: polysaccharide deacetylase family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 1W17
- UniProt: O34928
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: pdaA PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190]
[WorldCat.org]
[DOI]
(P p)
Tatsuya Fukushima, Toshihiko Kitajima, Junichi Sekiguchi
A polysaccharide deacetylase homologue, PdaA, in Bacillus subtilis acts as an N-acetylmuramic acid deacetylase in vitro.
J Bacteriol: 2005, 187(4);1287-92
[PubMed:15687192]
[WorldCat.org]
[DOI]
(P p)
David E Blair, Daan M F van Aalten
Structures of Bacillus subtilis PdaA, a family 4 carbohydrate esterase, and a complex with N-acetyl-glucosamine.
FEBS Lett: 2004, 570(1-3);13-9
[PubMed:15251431]
[WorldCat.org]
[DOI]
(P p)
Meghan E Gilmore, Dabanjan Bandyopadhyay, Amanda M Dean, Sarah D Linnstaedt, David L Popham
Production of muramic delta-lactam in Bacillus subtilis spore peptidoglycan.
J Bacteriol: 2004, 186(1);80-9
[PubMed:14679227]
[WorldCat.org]
[DOI]
(P p)
Tatsuya Fukushima, Hiroki Yamamoto, Abdelmadjid Atrih, Simon J Foster, Junichi Sekiguchi
A polysaccharide deacetylase gene (pdaA) is required for germination and for production of muramic delta-lactam residues in the spore cortex of Bacillus subtilis.
J Bacteriol: 2002, 184(21);6007-15
[PubMed:12374835]
[WorldCat.org]
[DOI]
(P p)
