Difference between revisions of "KdgA"

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|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of galacturonic acid  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of galacturonic acid  
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU22100 kdgA]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22100 kdgA]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 20 kDa, 5.273   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 20 kDa, 5.273   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[kdgT]]'', ''[[kdgK]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[kdgT]]'', ''[[kdgK]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14127&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22100 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:kdgA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:kdgA_context.gif]]

Revision as of 13:07, 13 May 2013

  • Description: 2-dehydro-3-deoxy-phosphogluconate aldolase

Gene name kdgA
Synonyms
Essential no
Product 2-dehydro-3-deoxy-phosphogluconate aldolase
Function utilization of galacturonic acid
Gene expression levels in SubtiExpress: kdgA
MW, pI 20 kDa, 5.273
Gene length, protein length 588 bp, 196 aa
Immediate neighbours kdgT, kdgK
Sequences Protein DNA Advanced_DNA
Genetic context
KdgA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
KdgA expression.png
























Categories containing this gene/protein

utilization of specific carbon sources, membrane proteins

This gene is a member of the following regulons

CcpA regulon, KdgR regulon

The gene

Basic information

  • Locus tag: BSU22100

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: 4-hydroxy-2-oxoglutarate = pyruvate + glyoxylate (according to Swiss-Prot)
  • Protein family: anti-sigma-factor family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Petar Pujic, Rozenn Dervyn, Alexei Sorokin, S Dusko Ehrlich
The kdgRKAT operon of Bacillus subtilis: detection of the transcript and regulation by the kdgR and ccpA genes.
Microbiology (Reading): 1998, 144 ( Pt 11);3111-3118
[PubMed:9846747] [WorldCat.org] [DOI] (P p)