Difference between revisions of "KdgT"
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= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
{{SubtiWiki regulon|[[CcpA regulon]]}}, | {{SubtiWiki regulon|[[CcpA regulon]]}}, | ||
| − | {{SubtiWiki regulon|[[KdgR regulon]]}} | + | {{SubtiWiki regulon|[[KdgR regulon]]}}, |
| + | [[Efp-dependent proteins]] | ||
=The gene= | =The gene= | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=kdgT_2321972_2322964_-1 kdgT] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=kdgT_2321972_2322964_-1 kdgT] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigA]] {{PubMed|9846747}} | + | * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|9846747}} |
* '''Regulation:''' | * '''Regulation:''' | ||
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* '''Additional information:''' | * '''Additional information:''' | ||
| + | ** [[translation]] is likely to require [[Efp]] due to the presence of several consecutive proline residues {{PubMed|23239624,23239623}} | ||
=Biological materials = | =Biological materials = | ||
Revision as of 19:21, 29 April 2013
- Description: 2-keto-3-deoxygluconate permease
| Gene name | kdgT |
| Synonyms | |
| Essential | no |
| Product | 2-keto-3-deoxygluconate permease |
| Function | utilization of galacturonic acid |
| Gene expression levels in SubtiExpress: kdgT | |
| MW, pI | 34 kDa, 8.935 |
| Gene length, protein length | 990 bp, 330 aa |
| Immediate neighbours | ypwA, kdgA |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
transporters/ other, utilization of specific carbon sources
This gene is a member of the following regulons
CcpA regulon, KdgR regulon, Efp-dependent proteins
The gene
Basic information
- Locus tag: BSU22090
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: sigma-70 factor family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P50847
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
- translation is likely to require Efp due to the presence of several consecutive proline residues PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Petar Pujic, Rozenn Dervyn, Alexei Sorokin, S Dusko Ehrlich
The kdgRKAT operon of Bacillus subtilis: detection of the transcript and regulation by the kdgR and ccpA genes.
Microbiology (Reading): 1998, 144 ( Pt 11);3111-3118
[PubMed:9846747]
[WorldCat.org]
[DOI]
(P p)
