Difference between revisions of "YkgB"
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* '''Operon:''' ''[[ykgA]]-[[ykgB]]'' {{PubMed|10482513}} | * '''Operon:''' ''[[ykgA]]-[[ykgB]]'' {{PubMed|10482513}} | ||
| − | * '''[ | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ykgB_1369876_1370925_-1 ykgB] {{PubMed|22383849}} |
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| + | * '''Sigma factor:''' [[SigB]] {{PubMed|10482513}} | ||
* '''Regulation:''' | * '''Regulation:''' | ||
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* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| − | * '''Additional information:''' | + | * '''Additional information:''' |
=Biological materials = | =Biological materials = | ||
Revision as of 07:25, 13 April 2012
- Description: putative 6-phosphogluconolactonase, general stress protein
| Gene name | ykgB |
| Synonyms | |
| Essential | no |
| Product | putative 6-phosphogluconolactonase |
| Function | pentose phosphate pathway |
| MW, pI | 38 kDa, 5.154 |
| Gene length, protein length | 1047 bp, 349 aa |
| Immediate neighbours | ykfD, ykgA |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
general stress proteins (controlled by SigB), carbon core metabolism
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU13010
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: the corresponding protein of E. coli is the 6-phosphogluconolactonase PubMed
- Protein family: cycloisomerase 2 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O34499
- KEGG entry: [3]
- E.C. number: 3.1.1.31
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Lynn C Thomason, Donald L Court, Atin R Datta, Rita Khanna, Judah L Rosner
Identification of the Escherichia coli K-12 ybhE gene as pgl, encoding 6-phosphogluconolactonase.
J Bacteriol: 2004, 186(24);8248-53
[PubMed:15576773]
[WorldCat.org]
[DOI]
(P p)
A Petersohn, J Bernhardt, U Gerth, D Höper, T Koburger, U Völker, M Hecker
Identification of sigma(B)-dependent genes in Bacillus subtilis using a promoter consensus-directed search and oligonucleotide hybridization.
J Bacteriol: 1999, 181(18);5718-24
[PubMed:10482513]
[WorldCat.org]
[DOI]
(P p)
