Difference between revisions of "PBSX prophage"
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{{CategoryTree | {{CategoryTree | ||
|Parents= | |Parents= | ||
| − | * 5. Prophages and mobile genetic elements | + | * 5. [[Prophages and mobile genetic elements]] |
| − | ** 5.1. Prophages | + | ** 5.1. [[Prophages]] |
|Neighbours= | |Neighbours= | ||
| − | + | * 5.1.1. [[PBSX prophage]] | |
| − | + | * 5.1.2. [[SPß prophage]] | |
| − | + | * 5.1.3. [[Skin element]] | |
| − | ** 5.1. | + | * 5.1.4. [[Prophage 1]] |
| + | * 5.1.5. [[Prophage 3]] | ||
| + | * 5.1.6. [[Phage-related functions]] | ||
|Related= | |Related= | ||
| − | + | * [[Xre regulon]] | |
|}} | |}} | ||
| + | |||
| + | == Important note== | ||
| + | * A strain devoid of [[PBSX prophage]] , [[SP-beta prophage]] and the [[Skin element]] (TF8A) as well as a strain devoid of all six prophages of the 168 genome (D6) is available in [[Jan Maarten van Dijl]]'s lab {{PubMed|12949151}} | ||
| + | == Genes in this functional category == | ||
| + | * ''[[pghB]]'' | ||
| + | * ''[[xepA]]'' | ||
| + | * ''[[xhlA]]'' | ||
| + | * ''[[xhlB]]'' | ||
| + | * ''[[xkdA]]'' | ||
| + | * ''[[xkdB]]'' | ||
| + | * ''[[xkdC]]'' | ||
| + | * ''[[xkdD]]'' | ||
| + | * ''[[xkdE]]'' | ||
| + | * ''[[xkdF]]'' | ||
| + | * ''[[xkdG]]'' | ||
| + | * ''[[xkdH]]'' | ||
| + | * ''[[xkdI]]'' | ||
| + | * ''[[xkdJ]]'' | ||
| + | * ''[[xkdK]]'' | ||
| + | * ''[[xkdM]]'' | ||
| + | * ''[[xkdN]]'' | ||
| + | * ''[[xkdO]]'' | ||
| + | * ''[[xkdP]]'' | ||
| + | * ''[[xkdQ]]'' | ||
| + | * ''[[xkdR]]'' | ||
| + | * ''[[xkdS]]'' | ||
| + | * ''[[xkdT]]'' | ||
| + | * ''[[xkdU]]'' | ||
| + | * ''[[xkdV]]'' | ||
| + | * ''[[xkdW]]'' | ||
| + | * ''[[xkdX]]'' | ||
| + | * ''[[xkzA]]'' | ||
| + | * ''[[xkzB]]'' | ||
| + | * ''[[xlyA]]'' | ||
| + | * ''[[xlyB]]'' | ||
| + | * ''[[xpf]]'' | ||
| + | * ''[[xre]]'' | ||
| + | * ''[[xtmA]]'' | ||
| + | * ''[[xtmB]]'' | ||
| + | * ''[[xtrA]]'' | ||
| + | * ''[[yjqA]]'' | ||
| + | |||
| + | * ''[[yjqC]]'' | ||
| + | * ''[[yjzJ]]'' | ||
| + | * ''[[ykzK]]'' | ||
| + | * ''[[ykzL]]'' | ||
| + | * ''[[ykzM]]'' | ||
| + | |||
| + | == References== | ||
| + | <pubmed> 12949151 </pubmed> | ||
| + | |||
| + | ==Key publications== | ||
| + | <pubmed> 8760915 9555893 8083174 7921239 2110147 3923209 </pubmed> | ||
| + | =Back to [[categories]]= | ||
Latest revision as of 08:51, 13 July 2015
| Parent categories | |
| Neighbouring categories |
|
| Related categories | |
Contents
Important note
- A strain devoid of PBSX prophage , SP-beta prophage and the Skin element (TF8A) as well as a strain devoid of all six prophages of the 168 genome (D6) is available in Jan Maarten van Dijl's lab PubMed
Genes in this functional category
- pghB
- xepA
- xhlA
- xhlB
- xkdA
- xkdB
- xkdC
- xkdD
- xkdE
- xkdF
- xkdG
- xkdH
- xkdI
- xkdJ
- xkdK
- xkdM
- xkdN
- xkdO
- xkdP
- xkdQ
- xkdR
- xkdS
- xkdT
- xkdU
- xkdV
- xkdW
- xkdX
- xkzA
- xkzB
- xlyA
- xlyB
- xpf
- xre
- xtmA
- xtmB
- xtrA
- yjqA
References
Helga Westers, Ronald Dorenbos, Jan Maarten van Dijl, Jorrit Kabel, Tony Flanagan, Kevin M Devine, Florence Jude, Simone J Seror, Aaron C Beekman, Elise Darmon, Caroline Eschevins, Anne de Jong, Sierd Bron, Oscar P Kuipers, Alessandra M Albertini, Haike Antelmann, Michael Hecker, Nicola Zamboni, Uwe Sauer, Claude Bruand, Dusko S Ehrlich, Juan C Alonso, Margarita Salas, Wim J Quax
Genome engineering reveals large dispensable regions in Bacillus subtilis.
Mol Biol Evol: 2003, 20(12);2076-90
[PubMed:12949151]
[WorldCat.org]
[DOI]
(P p)
Key publications
S Krogh, S T Jørgensen, K M Devine
Lysis genes of the Bacillus subtilis defective prophage PBSX.
J Bacteriol: 1998, 180(8);2110-7
[PubMed:9555893]
[WorldCat.org]
[DOI]
(P p)
S Krogh, M O'Reilly, N Nolan, K M Devine
The phage-like element PBSX and part of the skin element, which are resident at different locations on the Bacillus subtilis chromosome, are highly homologous.
Microbiology (Reading): 1996, 142 ( Pt 8);2031-40
[PubMed:8760915]
[WorldCat.org]
[DOI]
(P p)
G E McDonnell, H Wood, K M Devine, D J McConnell
Genetic control of bacterial suicide: regulation of the induction of PBSX in Bacillus subtilis.
J Bacteriol: 1994, 176(18);5820-30
[PubMed:8083174]
[WorldCat.org]
[DOI]
(P p)
P F Longchamp, C Mauël, D Karamata
Lytic enzymes associated with defective prophages of Bacillus subtilis: sequencing and characterization of the region comprising the N-acetylmuramoyl-L-alanine amidase gene of prophage PBSX.
Microbiology (Reading): 1994, 140 ( Pt 8);1855-67
[PubMed:7921239]
[WorldCat.org]
[DOI]
(P p)
H E Wood, M T Dawson, K M Devine, D J McConnell
Characterization of PBSX, a defective prophage of Bacillus subtilis.
J Bacteriol: 1990, 172(5);2667-74
[PubMed:2110147]
[WorldCat.org]
[DOI]
(P p)
L M Anderson, K F Bott
DNA packaging by the Bacillus subtilis defective bacteriophage PBSX.
J Virol: 1985, 54(3);773-80
[PubMed:3923209]
[WorldCat.org]
[DOI]
(P p)
