Difference between revisions of "PghL"

From SubtiWiki
Jump to: navigation, search
(The protein)
Line 67: Line 67:
  
 
* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
 +
** hyhrolysis of polyglutamic acid {{PubMed|26158264}}
  
 
* '''Protein family:''' UPF0714 family (according to Swiss-Prot)
 
* '''Protein family:''' UPF0714 family (according to Swiss-Prot)
  
* '''Paralogous protein(s):'''
+
* '''Paralogous protein(s):''' [[PghB]], [[PghC]], [[PghZ]]
  
 
=== Extended information on the protein ===
 
=== Extended information on the protein ===
Line 76: Line 77:
 
* '''Kinetic information:'''
 
* '''Kinetic information:'''
  
* '''Domains:'''  
+
* '''[[Domains]]:''' DUF867 [http://pfam.xfam.org/family/PF05908], [[gamma-PGA hydrolase domain]] {{PubMed|26158264}}
  
 
* '''Modification:'''
 
* '''Modification:'''

Revision as of 08:41, 13 July 2015

  • Description: phage-derived gamma polyglutamic acid hydrolase, sporulation protein

Gene name yndL
Synonyms
Essential no
Product phage-derived gamma polyglutamic acid hydrolase
Function polyglutamic acid degradation
Gene expression levels in SubtiExpress: yndL
MW, pI 28 kDa, 6.92
Gene length, protein length 756 bp, 252 aa
Immediate neighbours surA, yndM
Sequences Protein DNA DNA_with_flanks
Genetic context
YndL context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YndL expression.png















Categories containing this gene/protein

capsule biosynthesis and degradation, sporulation proteins, membrane proteins

This gene is a member of the following regulons

SigK regulon

The gene

Basic information

  • Locus tag: BSU17820

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
    • hyhrolysis of polyglutamic acid PubMed
  • Protein family: UPF0714 family (according to Swiss-Prot)

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [4]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: expressed during sporulation in the mother cellPubMed
  • Regulatory mechanism:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References