Difference between revisions of "PghL"
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* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| + | ** hyhrolysis of polyglutamic acid {{PubMed|26158264}} | ||
* '''Protein family:''' UPF0714 family (according to Swiss-Prot) | * '''Protein family:''' UPF0714 family (according to Swiss-Prot) | ||
| − | * '''Paralogous protein(s):''' | + | * '''Paralogous protein(s):''' [[PghB]], [[PghC]], [[PghZ]] |
=== Extended information on the protein === | === Extended information on the protein === | ||
| Line 76: | Line 77: | ||
* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' DUF867 [http://pfam.xfam.org/family/PF05908], [[gamma-PGA hydrolase domain]] {{PubMed|26158264}} |
* '''Modification:''' | * '''Modification:''' | ||
Revision as of 08:41, 13 July 2015
- Description: phage-derived gamma polyglutamic acid hydrolase, sporulation protein
| Gene name | yndL |
| Synonyms | |
| Essential | no |
| Product | phage-derived gamma polyglutamic acid hydrolase |
| Function | polyglutamic acid degradation |
| Gene expression levels in SubtiExpress: yndL | |
| MW, pI | 28 kDa, 6.92 |
| Gene length, protein length | 756 bp, 252 aa |
| Immediate neighbours | surA, yndM |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
capsule biosynthesis and degradation, sporulation proteins, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU17820
Phenotypes of a mutant
Database entries
- BsubCyc: BSU17820
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- hyhrolysis of polyglutamic acid PubMed
- Protein family: UPF0714 family (according to Swiss-Prot)
Extended information on the protein
- Kinetic information:
- Domains: DUF867 [3], gamma-PGA hydrolase domain PubMed
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cell membrane (according to Swiss-Prot)
Database entries
- BsubCyc: BSU17820
- Structure:
- UniProt: O31815
- KEGG entry: [4]
- E.C. number:
Additional information
Expression and regulation
- Operon: yndL PubMed
- Regulation: expressed during sporulation in the mother cellPubMed
- Regulatory mechanism:
- Additional information:
- An antisense RNA, surA, is predicted for yndL PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Stefania Mamberti, Paola Prati, Paolo Cremaschi, Claudio Seppi, Carlo F Morelli, Alessandro Galizzi, Massimo Fabbi, Cinzia Calvio
γ-PGA Hydrolases of Phage Origin in Bacillus subtilis and Other Microbial Genomes.
PLoS One: 2015, 10(7);e0130810
[PubMed:26158264]
[WorldCat.org]
[DOI]
(I e)
Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796]
[WorldCat.org]
[DOI]
(I p)
Jessica M Silvaggi, John B Perkins, Richard Losick
Genes for small, noncoding RNAs under sporulation control in Bacillus subtilis.
J Bacteriol: 2006, 188(2);532-41
[PubMed:16385044]
[WorldCat.org]
[DOI]
(P p)
