Difference between revisions of "Stringent response"
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* ''[[gcaD]]-[[prs]]'' | * ''[[gcaD]]-[[prs]]'' | ||
* ''[[infA]]'' | * ''[[infA]]'' | ||
| − | * ''[[ | + | * ''[[infC]]-[[rpmI]]-[[rplT]]'' |
| − | |||
* ''[[map]]'' | * ''[[map]]'' | ||
* ''[[mbl]]'' | * ''[[mbl]]'' | ||
* ''[[murE]]'' | * ''[[murE]]'' | ||
| − | |||
| − | |||
* ''[[nusB]]'' | * ''[[nusB]]'' | ||
| − | * ''[[pdhA]] | + | * ''[[pdhA]]-[[pdhB]]-[[pdhC]]-[[pdhD]]'' |
| − | |||
| − | |||
| − | |||
* ''[[pnpA]]'' | * ''[[pnpA]]'' | ||
* ''[[ptsG]]-[[ptsH]]-[[ptsI]]'' | * ''[[ptsG]]-[[ptsH]]-[[ptsI]]'' | ||
* ''[[pyrH]]'' | * ''[[pyrH]]'' | ||
| − | * ''[[qoxA]] | + | * ''[[qoxA]]-[[qoxB]]-[[qoxC]]-[[qoxD]]'' |
| − | + | * ''[[recJ]]'' | |
| − | |||
| − | |||
| − | * ''[[ | ||
* ''[[rnc]]'' | * ''[[rnc]]'' | ||
* ''[[rplA]]'' | * ''[[rplA]]'' | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[rplJ]]'' | * ''[[rplJ]]'' | ||
* ''[[rplK]]'' | * ''[[rplK]]'' | ||
* ''[[rplL]]'' | * ''[[rplL]]'' | ||
* ''[[rplM]]'' | * ''[[rplM]]'' | ||
| − | |||
| − | |||
| − | |||
* ''[[rplQ]]'' | * ''[[rplQ]]'' | ||
| − | |||
* ''[[rplS]]'' | * ''[[rplS]]'' | ||
| − | |||
* ''[[rplU]]'' | * ''[[rplU]]'' | ||
| − | |||
| − | |||
| − | |||
* ''[[rpmB]]'' | * ''[[rpmB]]'' | ||
| − | |||
| − | |||
* ''[[rpmE]]'' | * ''[[rpmE]]'' | ||
* ''[[rpmF]]'' | * ''[[rpmF]]'' | ||
| − | |||
* ''[[rpmJ]]'' | * ''[[rpmJ]]'' | ||
* ''[[rpoA]]'' | * ''[[rpoA]]'' | ||
| Line 68: | Line 43: | ||
* ''[[rpoC]]'' | * ''[[rpoC]]'' | ||
* ''[[rpsB]]'' | * ''[[rpsB]]'' | ||
| − | |||
* ''[[rpsD]]'' | * ''[[rpsD]]'' | ||
| − | * ''[[ | + | * ''[[rpsF]]-[[ssbA]]-[[rpsR]]'' |
| − | |||
* ''[[rpsG]]'' | * ''[[rpsG]]'' | ||
| − | |||
* ''[[rpsI]]'' | * ''[[rpsI]]'' | ||
| − | * ''[[rpsJ]]'' | + | * ''[[rpsJ]]-[[rplC]]-[[rplD]]-[[rplW]]-[[rplB]]-[[rpsS]]-[[rplV]]-[[rpsC]]-[[rplP]]-[[rpmC]]-[[rpsQ]]-[[rplN]]-[[rplX]]-[[rplE]]-[[rpsN]]-[[rpsH]]-[[rplF]]-[[rplR]]-[[rpsE]]-[[rpmD]]-[[rplO]]'' |
* ''[[rpsK]]'' | * ''[[rpsK]]'' | ||
* ''[[rpsL]]'' | * ''[[rpsL]]'' | ||
* ''[[rpsM]]'' | * ''[[rpsM]]'' | ||
| − | |||
* ''[[rpsO]]'' | * ''[[rpsO]]'' | ||
* ''[[rpsP]]'' | * ''[[rpsP]]'' | ||
| − | + | * ''[[scpA]]-[[scpB]]'' | |
| − | |||
| − | |||
| − | * ''[[scpA]] | ||
| − | |||
* ''[[secY]]'' | * ''[[secY]]'' | ||
| − | |||
* ''[[tig]]'' | * ''[[tig]]'' | ||
* ''[[truA]]'' | * ''[[truA]]'' | ||
| Line 95: | Line 61: | ||
* ''[[ybxB]]'' | * ''[[ybxB]]'' | ||
* ''[[ybxF]]'' | * ''[[ybxF]]'' | ||
| − | * ''[[yjlC]]'' | + | * ''[[yjlC]]-[[ndh]]'' |
* ''[[ylaG]]'' | * ''[[ylaG]]'' | ||
* ''[[ylbN]]'' | * ''[[ylbN]]'' | ||
| − | * ''[[ | + | * ''[[ylxS]]-[[nusA]]-[[ylxR]]-[[ylxQ]]-[[infB]]-[[ylxP]]-[[rbfA]]'' |
| − | + | ||
| − | |||
| − | |||
| − | |||
* ''[[ysxB]]'' | * ''[[ysxB]]'' | ||
* ''[[yugI]]'' | * ''[[yugI]]'' | ||
| Line 109: | Line 72: | ||
* ''[[alsS]]-[[alsD]]'' | * ''[[alsS]]-[[alsD]]'' | ||
* ''[[pycA]]'' | * ''[[pycA]]'' | ||
| + | |||
| + | =Key original publications= | ||
| + | <pubmed>20081037 18433449 11948165 9383190 </pubmed> | ||
| + | |||
| + | =Important reviews= | ||
| + | <pubmed>18452582 17982469 24462007 </pubmed> | ||
| + | |||
| + | =Back to [[regulons]]= | ||
Latest revision as of 08:52, 7 July 2015
| Regulator | |
Contents
Genes in this regulon
Negative regulation
- adk
- atpI-atpB-atpE-atpF-atpH-atpA-atpG-atpD-atpC
- cymR-yrvO-trmU
- dltA-dltB-dltC-dltD-dltE
- dxs
- frr
- fusA
- gcaD-prs
- infA
- infC-rpmI-rplT
- map
- mbl
- murE
- nusB
- pdhA-pdhB-pdhC-pdhD
- pnpA
- ptsG-ptsH-ptsI
- pyrH
- qoxA-qoxB-qoxC-qoxD
- recJ
- rnc
- rplA
- rplJ
- rplK
- rplL
- rplM
- rplQ
- rplS
- rplU
- rpmB
- rpmE
- rpmF
- rpmJ
- rpoA
- rpoB
- rpoC
- rpsB
- rpsD
- rpsF-ssbA-rpsR
- rpsG
- rpsI
- rpsJ-rplC-rplD-rplW-rplB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ-rplN-rplX-rplE-rpsN-rpsH-rplF-rplR-rpsE-rpmD-rplO
- rpsK
- rpsL
- rpsM
- rpsO
- rpsP
- scpA-scpB
- secY
- tig
- truA
- tsf
- tufA
- ybxB
- ybxF
- yjlC-ndh
- ylaG
- ylbN
- ylxS-nusA-ylxR-ylxQ-infB-ylxP-rbfA
Positive regulation
Key original publications
Shigeo Tojo, Kanako Kumamoto, Kazutake Hirooka, Yasutaro Fujita
Heavy involvement of stringent transcription control depending on the adenine or guanine species of the transcription initiation site in glucose and pyruvate metabolism in Bacillus subtilis.
J Bacteriol: 2010, 192(6);1573-85
[PubMed:20081037]
[WorldCat.org]
[DOI]
(I p)
Libor Krásný, Hana Tiserová, Jirí Jonák, Dominik Rejman, Hana Sanderová
The identity of the transcription +1 position is crucial for changes in gene expression in response to amino acid starvation in Bacillus subtilis.
Mol Microbiol: 2008, 69(1);42-54
[PubMed:18433449]
[WorldCat.org]
[DOI]
(I p)
Christine Eymann, Georg Homuth, Christian Scharf, Michael Hecker
Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis.
J Bacteriol: 2002, 184(9);2500-20
[PubMed:11948165]
[WorldCat.org]
[DOI]
(P p)
T M Wendrich, M A Marahiel
Cloning and characterization of a relA/spoT homologue from Bacillus subtilis.
Mol Microbiol: 1997, 26(1);65-79
[PubMed:9383190]
[WorldCat.org]
[DOI]
(P p)
Important reviews
Tobias Geiger, Christiane Wolz
Intersection of the stringent response and the CodY regulon in low GC Gram-positive bacteria.
Int J Med Microbiol: 2014, 304(2);150-5
[PubMed:24462007]
[WorldCat.org]
[DOI]
(I p)
Charles L Turnbough
Regulation of bacterial gene expression by the NTP substrates of transcription initiation.
Mol Microbiol: 2008, 69(1);10-4
[PubMed:18452582]
[WorldCat.org]
[DOI]
(I p)
Abraham L Sonenshein
Control of key metabolic intersections in Bacillus subtilis.
Nat Rev Microbiol: 2007, 5(12);917-27
[PubMed:17982469]
[WorldCat.org]
[DOI]
(I p)
