Difference between revisions of "YjiB"
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=== Additional information=== | === Additional information=== | ||
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=The protein= | =The protein= | ||
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* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU12210&redirect=T BSU12210] | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU12210&redirect=T BSU12210] | ||
| − | * '''Structure:''' | + | * '''Structure:''' {{PubMed|25587700}} |
* '''UniProt:''' [http://www.uniprot.org/uniprot/O34374 O34374] | * '''UniProt:''' [http://www.uniprot.org/uniprot/O34374 O34374] | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjiB_1291344_1292534_1 yjiB] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjiB_1291344_1292534_1 yjiB] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
| − | <pubmed>19591681 20186410 </pubmed> | + | <pubmed>19591681 20186410 25587700 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 11:34, 15 January 2015
- Description: cytochrome P450, monooxygenase CYP109B1
| Gene name | yjiB |
| Synonyms | |
| Essential | no |
| Product | monooxygenase CYP109B1 |
| Function | oxidation of fatty acids |
| Gene expression levels in SubtiExpress: yjiB | |
| Interactions involving this protein in SubtInteract: YjiB | |
| Metabolic function and regulation of this protein in SubtiPathways: YjiB | |
| MW, pI | 44 kDa, 5.379 |
| Gene length, protein length | 1188 bp, 396 aa |
| Immediate neighbours | yjiA, yjiC |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
electron transport/ other, lipid metabolism/ other
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU12210
Phenotypes of a mutant
Database entries
- BsubCyc: BSU12210
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- oxidation of saturated fatty acids (conversion up to 99%) and their methyl and ethyl esters (conversion up to 80%) at subterminal positions with a preference for the carbon atoms C11 and C12 counted from the carboxyl group PubMed
- Protein family: cytochrome P450 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU12210
- Structure: PubMed
- UniProt: O34374
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Aili Zhang, Ting Zhang, Emma A Hall, Sean Hutchinson, Max J Cryle, Luet-Lok Wong, Weihong Zhou, Stephen G Bell
The crystal structure of the versatile cytochrome P450 enzyme CYP109B1 from Bacillus subtilis.
Mol Biosyst: 2015, 11(3);869-81
[PubMed:25587700]
[WorldCat.org]
[DOI]
(I p)
Marco Girhard, Tobias Klaus, Yogan Khatri, Rita Bernhardt, Vlada B Urlacher
Characterization of the versatile monooxygenase CYP109B1 from Bacillus subtilis.
Appl Microbiol Biotechnol: 2010, 87(2);595-607
[PubMed:20186410]
[WorldCat.org]
[DOI]
(I p)
Marco Girhard, Kazuhiro Machida, Masashi Itoh, Rolf D Schmid, Akira Arisawa, Vlada B Urlacher
Regioselective biooxidation of (+)-valencene by recombinant E. coli expressing CYP109B1 from Bacillus subtilis in a two-liquid-phase system.
Microb Cell Fact: 2009, 8;36
[PubMed:19591681]
[WorldCat.org]
[DOI]
(I e)
