Difference between revisions of "OppD"

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** number of protein molecules per cell (minimal medium with glucose and ammonium): 138 {{PubMed|24696501}}
 
** number of protein molecules per cell (minimal medium with glucose and ammonium): 138 {{PubMed|24696501}}
 
** number of protein molecules per cell (complex medium with amino acids, without glucose): 1235 {{PubMed|24696501}}
 
** number of protein molecules per cell (complex medium with amino acids, without glucose): 1235 {{PubMed|24696501}}
 +
** number of protein molecules per cell (minimal medium with glucose and ammonium, exponential phase): 40 {{PubMed|21395229}}
 +
** number of protein molecules per cell (minimal medium with glucose and ammonium, early stationary phase after glucose exhaustion): 148 {{PubMed|21395229}}
 +
** number of protein molecules per cell (minimal medium with glucose and ammonium, late stationary phase after glucose exhaustion): 68 {{PubMed|21395229}}
  
 
=Biological materials =
 
=Biological materials =
 
 
* '''Mutant:'''
 
* '''Mutant:'''
  

Revision as of 14:11, 17 April 2014

Gene name oppD
Synonyms spo0KD
Essential no
Product oligopeptide ABC transporter (ATP-binding protein)
Function initiation of sporulation, competence development
Gene expression levels in SubtiExpress: oppD
Interactions involving this protein in SubtInteract: OppD
Metabolic function and regulation of this protein in SubtiPathways:
oppD
MW, pI 39 kDa, 6.028
Gene length, protein length 1074 bp, 358 aa
Immediate neighbours oppC, oppF
Sequences Protein DNA DNA_with_flanks
Genetic context
OppD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
OppD expression.png
























Categories containing this gene/protein

ABC transporters, utilization of nitrogen sources other than amino acids, genetic competence, phosphorelay, membrane proteins

This gene is a member of the following regulons

ScoC regulon, TnrA regulon

The gene

Basic information

  • Locus tag: BSU11460

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
    • required for the uptake of quorum sensing peptides such as PhrH PubMed
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • expressed in the absence of good nitrogen sources (glutamine or ammonium) (TnrA) PubMed
    • repressed during exponential growth (ScoC) PubMed
  • Additional information:
    • number of protein molecules per cell (minimal medium with glucose and ammonium): 138 PubMed
    • number of protein molecules per cell (complex medium with amino acids, without glucose): 1235 PubMed
    • number of protein molecules per cell (minimal medium with glucose and ammonium, exponential phase): 40 PubMed
    • number of protein molecules per cell (minimal medium with glucose and ammonium, early stationary phase after glucose exhaustion): 148 PubMed
    • number of protein molecules per cell (minimal medium with glucose and ammonium, late stationary phase after glucose exhaustion): 68 PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed