Difference between revisions of "RpsF"
| Line 79: | Line 79: | ||
* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' |
* '''Modification:''' | * '''Modification:''' | ||
| − | * ''' | + | * '''[[Cofactors]]:''' |
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
* '''[[SubtInteract|Interactions]]:''' | * '''[[SubtInteract|Interactions]]:''' | ||
| + | ** [[RpsF]]-[[RpsR]], the heterodimer binds the structure in the ''[[rpsF]]'' mRNA 5' UTR {{PubMed|24310371}} | ||
* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
| Line 104: | Line 105: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[yyaF]]-[[rpsF]]-[[ssbA]]-[[rpsR]]'' {{PubMed|14762004}} | + | * '''Operon:''' |
| + | ** ''[[yyaF]]-[[rpsF]]-[[ssbA]]-[[rpsR]]'' {{PubMed|14762004}} | ||
| + | ** ''[[rpsF]]-[[ssbA]]-[[rpsR]]'' {{PubMed|24310371,22383849}} | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpsF_4199445_4199732_-1 rpsF] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpsF_4199445_4199732_-1 rpsF] {{PubMed|22383849}} | ||
* '''[[Sigma factor]]:''' | * '''[[Sigma factor]]:''' | ||
| + | ** ''[[rpsF]]'': [[SigA]] {{PubMed|24310371}} | ||
* '''Regulation:''' | * '''Regulation:''' | ||
| Line 115: | Line 119: | ||
* '''Additional information:''' | * '''Additional information:''' | ||
| + | ** the mRNA contains a structured motif in the 5' UTR upstream of the ''[[rpsF]]'' ORF that is bound by [[RpsF]]-[[RpsR]] heterodimers and may be implicated in autogenous regulation {{PubMed|24310371}} | ||
=Biological materials = | =Biological materials = | ||
| Line 135: | Line 140: | ||
=References= | =References= | ||
| − | <pubmed>19653700 14762004 11948165 11948146 23002217</pubmed> | + | <pubmed>19653700 14762004 11948165 11948146 23002217 22383849 24310371 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 18:29, 13 December 2013
- Description: ribosomal protein
| Gene name | rpsF |
| Synonyms | |
| Essential | no PubMed |
| Product | ribosomal protein S6 (BS9) |
| Function | translation |
| Gene expression levels in SubtiExpress: rpsF | |
| Interactions involving this protein in SubtInteract: RpsF | |
| MW, pI | 10 kDa, 4.993 |
| Gene length, protein length | 285 bp, 95 aa |
| Immediate neighbours | ssbA, yyaF |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
ComK regulon, stringent response
The gene
Basic information
- Locus tag: BSU40910
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: ribosomal protein S6P family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
Database entries
- Structure: 3R3T (from Bacillus anthracis, 71% identity, 97% similarity)
- UniProt: P21468
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
