Difference between revisions of "GntR"

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= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gntR_4113417_4114148_1 gntR] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gntR_4113417_4114148_1 gntR] {{PubMed|22383849}}
  
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* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/3020045 PubMed]
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* '''[[Sigma factor]]:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/3020045 PubMed]
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
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'''Additional publications:''' {{PubMed|20817675}}
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<pubmed>8370661,8808939,8288545,7642511,7476858,8596444,3011959,2163901,3037520,2492998,9106211,2419835,2124676,3020045,10746760,8510140,2843515,7476858 3020045 1659648, 21106498 22900538 220817675</pubmed>
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<pubmed>8370661,8808939,8288545,7642511,7476858,8596444,3011959,2163901,3037520,2492998,9106211,2419835,2124676,3020045,10746760,8510140,2843515,7476858 3020045 1659648, 21106498 22900538 </pubmed>
 
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 21:31, 18 June 2013

Gene name gntR
Synonyms
Essential no
Product transcriptional repressor of the gluconate operon
Function regulation of gluconate utilization
Gene expression levels in SubtiExpress: gntR
Metabolic function and regulation of this protein in SubtiPathways:
Sugar catabolism
MW, pI 28 kDa, 5.26
Gene length, protein length 729 bp, 243 aa
Immediate neighbours yxaA, gntK
Sequences Protein DNA DNA_with_flanks
Genetic context
GntR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
GntR expression.png















Categories containing this gene/protein

utilization of specific carbon sources, transcription factors and their control

This gene is a member of the following regulons

AbrB regulon, CcpA regulon, GntR regulon

The GntR regulon:

The gene

Basic information

  • Locus tag: BSU40050

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity: gluconate acts as molecular inducer

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Bogumiła C Marciniak, Monika Pabijaniak, Anne de Jong, Robert Dűhring, Gerald Seidel, Wolfgang Hillen, Oscar P Kuipers
High- and low-affinity cre boxes for CcpA binding in Bacillus subtilis revealed by genome-wide analysis.
BMC Genomics: 2012, 13;401
[PubMed:22900538] [WorldCat.org] [DOI] (I e)

Maria A Schumacher, Mareen Sprehe, Maike Bartholomae, Wolfgang Hillen, Richard G Brennan
Structures of carbon catabolite protein A-(HPr-Ser46-P) bound to diverse catabolite response element sites reveal the basis for high-affinity binding to degenerate DNA operators.
Nucleic Acids Res: 2011, 39(7);2931-42
[PubMed:21106498] [WorldCat.org] [DOI] (I p)

Ken-Ichi Yoshida, Izumi Ishio, Eishi Nagakawa, Yoshiyuki Yamamoto, Mami Yamamoto, Yasutaro Fujita
Systematic study of gene expression and transcription organization in the gntZ-ywaA region of the Bacillus subtilis genome.
Microbiology (Reading): 2000, 146 ( Pt 3);573-579
[PubMed:10746760] [WorldCat.org] [DOI] (P p)

Y Miwa, K Nagura, S Eguchi, H Fukuda, J Deutscher, Y Fujita
Catabolite repression of the Bacillus subtilis gnt operon exerted by two catabolite-responsive elements.
Mol Microbiol: 1997, 23(6);1203-13
[PubMed:9106211] [WorldCat.org] [DOI] (P p)

J Reizer, U Bergstedt, A Galinier, E Küster, M H Saier, W Hillen, M Steinmetz, J Deutscher
Catabolite repression resistance of gnt operon expression in Bacillus subtilis conferred by mutation of His-15, the site of phosphoenolpyruvate-dependent phosphorylation of the phosphocarrier protein HPr.
J Bacteriol: 1996, 178(18);5480-6
[PubMed:8808939] [WorldCat.org] [DOI] (P p)

K Yoshida, Y Miwa, H Ohmori, Y Fujita
Analysis of an insertional operator mutation (gntOi) that affects the expression level of the Bacillus subtilis gnt operon, and characterization of gntOi suppressor mutations.
Mol Gen Genet: 1995, 248(5);583-91
[PubMed:7476858] [WorldCat.org] [DOI] (P p)

Y Fujita, Y Miwa, A Galinier, J Deutscher
Specific recognition of the Bacillus subtilis gnt cis-acting catabolite-responsive element by a protein complex formed between CcpA and seryl-phosphorylated HPr.
Mol Microbiol: 1995, 17(5);953-60
[PubMed:8596444] [WorldCat.org] [DOI] (P p)

K Yoshida, H Ohmori, Y Miwa, Y Fujita
Bacillus subtilis gnt repressor mutants that diminish gluconate-binding ability.
J Bacteriol: 1995, 177(16);4813-6
[PubMed:7642511] [WorldCat.org] [DOI] (P p)

Y Fujita, Y Miwa
Catabolite repression of the Bacillus subtilis gnt operon mediated by the CcpA protein.
J Bacteriol: 1994, 176(2);511-3
[PubMed:8288545] [WorldCat.org] [DOI] (P p)

Y Miwa, Y Fujita
Promoter-independent catabolite repression of the Bacillus subtilis gnt operon.
J Biochem: 1993, 113(6);665-71
[PubMed:8370661] [WorldCat.org] [DOI] (P p)

K Yoshida, Y Fujita, A Sarai
Missense mutations in the Bacillus subtilis gnt repressor that diminish operator binding ability.
J Mol Biol: 1993, 231(2);167-74
[PubMed:8510140] [WorldCat.org] [DOI] (P p)

A Reizer, J Deutscher, M H Saier, J Reizer
Analysis of the gluconate (gnt) operon of Bacillus subtilis.
Mol Microbiol: 1991, 5(5);1081-9
[PubMed:1659648] [WorldCat.org] [DOI] (P p)

Y Miwa, Y Fujita
Determination of the cis sequence involved in catabolite repression of the Bacillus subtilis gnt operon; implication of a consensus sequence in catabolite repression in the genus Bacillus.
Nucleic Acids Res: 1990, 18(23);7049-53
[PubMed:2124676] [WorldCat.org] [DOI] (P p)

Y Fujita, T Fujita, Y Miwa
Evidence for posttranscriptional regulation of synthesis of the Bacillus subtilis Gnt repressor.
FEBS Lett: 1990, 267(1);71-4
[PubMed:2163901] [WorldCat.org] [DOI] (P p)

Y Fujita, Y Miwa
Identification of an operator sequence for the Bacillus subtilis gnt operon.
J Biol Chem: 1989, 264(7);4201-6
[PubMed:2492998] [WorldCat.org] (P p)

Y Miwa, Y Fujita
Purification and characterization of a repressor for the Bacillus subtilis gnt operon.
J Biol Chem: 1988, 263(26);13252-7
[PubMed:2843515] [WorldCat.org] (P p)

Y Fujita, T Fujita
The gluconate operon gnt of Bacillus subtilis encodes its own transcriptional negative regulator.
Proc Natl Acad Sci U S A: 1987, 84(13);4524-8
[PubMed:3037520] [WorldCat.org] [DOI] (P p)

Y Fujita, T Fujita, Y Miwa, J Nihashi, Y Aratani
Organization and transcription of the gluconate operon, gnt, of Bacillus subtilis.
J Biol Chem: 1986, 261(29);13744-53
[PubMed:3020045] [WorldCat.org] (P p)

Y Fujita, T Fujita
Identification and nucleotide sequence of the promoter region of the Bacillus subtilis gluconate operon.
Nucleic Acids Res: 1986, 14(3);1237-52
[PubMed:2419835] [WorldCat.org] [DOI] (P p)

Y Fujita, J Nihashi, T Fujita
The characterization and cloning of a gluconate (gnt) operon of Bacillus subtilis.
J Gen Microbiol: 1986, 132(1);161-9
[PubMed:3011959] [WorldCat.org] [DOI] (P p)

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