Difference between revisions of "IolC"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[iolD]]'', ''[[iolB]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[iolD]]'', ''[[iolB]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39740 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39740 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39740 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39740 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39740 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39740 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:iolC_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:iolC_context.gif]]

Revision as of 11:41, 14 May 2013

  • Description: formation of 2-deoxy-5-keto-gluconic acid-6-phosphate (5th reaction)

Gene name iolC
Synonyms yxdC
Essential no
Product formation of 2-deoxy-5-keto-gluconic
acid-6-phosphate (5th reaction)
Function myo-inositol catabolism
Gene expression levels in SubtiExpress: iolC
Metabolic function and regulation of this protein in SubtiPathways:
Sugar catabolism
MW, pI 35 kDa, 4.782
Gene length, protein length 975 bp, 325 aa
Immediate neighbours iolD, iolB
Sequences Protein DNA DNA_with_flanks
Genetic context
IolC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
IolC expression.png




























Categories containing this gene/protein

utilization of specific carbon sources

This gene is a member of the following regulons

CcpA regulon, IolR regulon

The gene

Basic information

  • Locus tag: BSU39740

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: ATP + 5-dehydro-2-deoxy-D-gluconate = ADP + 6-phospho-5-dehydro-2-deoxy-D-gluconate (according to Swiss-Prot)
  • Protein family: carbohydrate kinase pfkB family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 2QCV (from Bacillus halodurans c-125 mutant, 73% identity, 85% similarity)
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Ken-ichi Yoshida, Masanori Yamaguchi, Tetsuro Morinaga, Masaki Kinehara, Maya Ikeuchi, Hitoshi Ashida, Yasutaro Fujita
myo-Inositol catabolism in Bacillus subtilis.
J Biol Chem: 2008, 283(16);10415-24
[PubMed:18310071] [WorldCat.org] [DOI] (P p)

K I Yoshida, T Shibayama, D Aoyama, Y Fujita
Interaction of a repressor and its binding sites for regulation of the Bacillus subtilis iol divergon.
J Mol Biol: 1999, 285(3);917-29
[PubMed:9887260] [WorldCat.org] [DOI] (P p)

K I Yoshida, D Aoyama, I Ishio, T Shibayama, Y Fujita
Organization and transcription of the myo-inositol operon, iol, of Bacillus subtilis.
J Bacteriol: 1997, 179(14);4591-8
[PubMed:9226270] [WorldCat.org] [DOI] (P p)