Difference between revisions of "YvmC"

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|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of the extracellular iron chelate pulcherrimin
 
|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of the extracellular iron chelate pulcherrimin
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU35070 yvmC]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35070 yvmC]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 28 kDa, 6.612   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 28 kDa, 6.612   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cypX]]'', ''[[yvmB]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cypX]]'', ''[[yvmB]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15512&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU35070 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU35070 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU35070 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yvmC_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yvmC_context.gif]]

Revision as of 13:57, 13 May 2013

  • Description: cyclodipeptide synthase

Gene name yvmC
Synonyms
Essential no
Product cyclodipeptide synthase
Function biosynthesis of the extracellular iron chelate pulcherrimin
Gene expression levels in SubtiExpress: yvmC
MW, pI 28 kDa, 6.612
Gene length, protein length 744 bp, 248 aa
Immediate neighbours cypX, yvmB
Sequences Protein DNA Advanced_DNA
Genetic context
YvmC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YvmC expression.png
























Categories containing this gene/protein

acquisition of iron, iron metabolism

This gene is a member of the following regulons

AbrB regulon

The gene

Basic information

  • Locus tag: BSU35070

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
    • synthesis of the cyclic dipeptide cyclo-L-leucyl-L-leucyl with the corresponding charged tRNAs as substrates in an ATP-dependent manner PubMed
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure: 3S7T (from B. licheniformis, 70% identity, 86% similarity) PubMed
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Muriel Gondry, Ludovic Sauguet, Pascal Belin, Robert Thai, Rachel Amouroux, Carine Tellier, Karine Tuphile, Mickaël Jacquet, Sandrine Braud, Marie Courçon, Cédric Masson, Steven Dubois, Sylvie Lautru, Alain Lecoq, Shin-ichi Hashimoto, Roger Genet, Jean-Luc Pernodet
Cyclodipeptide synthases are a family of tRNA-dependent peptide bond-forming enzymes.
Nat Chem Biol: 2009, 5(6);414-20
[PubMed:19430487] [WorldCat.org] [DOI] (I p)

R L Uffen, E Canale-Parola
Synthesis of pulcherriminic acid by Bacillus subtilis.
J Bacteriol: 1972, 111(1);86-93
[PubMed:4204912] [WorldCat.org] [DOI] (P p)

additional paper