Difference between revisions of "YaaO"
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<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
{{SubtiWiki category|[[miscellaneous metabolic pathways]]}}, | {{SubtiWiki category|[[miscellaneous metabolic pathways]]}}, | ||
| − | {{SubtiWiki category|[[biofilm formation]]}} | + | {{SubtiWiki category|[[biofilm formation]]}}, |
| + | {{SubtiWiki category|[[sporulation proteins]]}} | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| − | + | {{SubtiWiki regulon|[[SigW regulon]]}}, | |
| + | {{SubtiWiki regulon|[[SigK regulon]]}} | ||
=The gene= | =The gene= | ||
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''[[xpaC]]-[[yaaN]]-[[yaaO]]'' {{PubMed|22383849}} |
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yaaO_37720_39162_1 yaaO] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yaaO_37720_39162_1 yaaO] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' [[SigW]] [http://www.ncbi.nlm.nih.gov/sites/entrez/9987136 PubMed], [[SigK]] {{PubMed|22383849}} |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
| − | <pubmed> 20876533 22541437 </pubmed> | + | <pubmed> 20876533 22541437 22383849 9987136</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 16:34, 8 May 2013
- Description: carboxynorspermidine decarboxylase
| Gene name | yaaO |
| Synonyms | |
| Essential | no |
| Product | carboxynorspermidine decarboxylase |
| Function | synthesis of norspermidine |
| Gene expression levels in SubtiExpress: yaaO | |
| Metabolic function and regulation of this protein in SubtiPathways: Nucleotides (regulation) | |
| MW, pI | 52 kDa, 5.713 |
| Gene length, protein length | 1440 bp, 480 aa |
| Immediate neighbours | yaaN, tmk |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
miscellaneous metabolic pathways, biofilm formation, sporulation proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU00270
Phenotypes of a mutant
- impaired biofilm disassembly PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- catalyzes the last step in norspermidine synthesis PubMed
- Protein family: Orn/Lys/Arg decarboxylase class-I family (according to Swiss-Prot)
- Paralogous protein(s): SpeA
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P37536
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
