Difference between revisions of "YxkD"

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* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
** regulation may involve a [[riboswitch]] {{PubMed|15096624}}
+
** expression of  ''[[yxkD]]'' may be controlled by the presumptive ''[[ykkC]]''/''[[yxkD]]'' [[riboswitch]] {{PubMed|15096624}}  
  
 
* '''Additional information:'''  
 
* '''Additional information:'''  
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=References=
 
=References=
  
<pubmed>15096624,10746760, </pubmed>
+
<pubmed>15096624,10746760, 21317561 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 09:16, 25 May 2011

  • Description: unknown

Gene name yxkD
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 30 kDa, 8.61
Gene length, protein length 834 bp, 278 aa
Immediate neighbours aldY, yxkC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YxkD context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU38840

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Michelle M Meyer, Ming C Hammond, Yasmmyn Salinas, Adam Roth, Narasimhan Sudarsan, Ronald R Breaker
Challenges of ligand identification for riboswitch candidates.
RNA Biol: 2011, 8(1);5-10
[PubMed:21317561] [WorldCat.org] [DOI] (I p)

Jeffrey E Barrick, Keith A Corbino, Wade C Winkler, Ali Nahvi, Maumita Mandal, Jennifer Collins, Mark Lee, Adam Roth, Narasimhan Sudarsan, Inbal Jona, J Kenneth Wickiser, Ronald R Breaker
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control.
Proc Natl Acad Sci U S A: 2004, 101(17);6421-6
[PubMed:15096624] [WorldCat.org] [DOI] (P p)

Ken-Ichi Yoshida, Izumi Ishio, Eishi Nagakawa, Yoshiyuki Yamamoto, Mami Yamamoto, Yasutaro Fujita
Systematic study of gene expression and transcription organization in the gntZ-ywaA region of the Bacillus subtilis genome.
Microbiology (Reading): 2000, 146 ( Pt 3);573-579
[PubMed:10746760] [WorldCat.org] [DOI] (P p)