Difference between revisions of "YkfD"

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(Extended information on the protein)
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* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:'''
+
* '''Interactions:''' ([[DppD]]-[[YkfD]])-([[DppB]]-[[DppC]])-[[DppE]] {{PubMed|10092453}}
  
* '''Localization:'''
+
* '''Localization:''' attached to the cell membrane (via [[DppB]]-[[DppC]]) {{PubMed|10092453}}
  
 
=== Database entries ===
 
=== Database entries ===

Revision as of 06:18, 1 November 2010

Gene name ykfD
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 36 kDa, 9.341
Gene length, protein length 981 bp, 327 aa
Immediate neighbours ykfC, ykgB
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YkfD context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU13000

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulatory mechanism: CodY: transcription repression PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Virginie Molle, Yoshiko Nakaura, Robert P Shivers, Hirotake Yamaguchi, Richard Losick, Yasutaro Fujita, Abraham L Sonenshein
Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis.
J Bacteriol: 2003, 185(6);1911-22
[PubMed:12618455] [WorldCat.org] [DOI] (P p)

Y Quentin, G Fichant, F Denizot
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems.
J Mol Biol: 1999, 287(3);467-84
[PubMed:10092453] [WorldCat.org] [DOI] (P p)