ymfC
168
similar to transcriptional regulator ([wiki|GntR family])
locus
BSU_16810
Molecular weight
27.75 kDa
pI
6.4
function
unknown
product
transcriptional regulator ([wiki|GntR family])
essential
no
synonyms
ymfC
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG2188 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
1,754,785 → 1,755,510
The protein
Protein family
[wiki|GntR family] of transcription factors
[wiki|Domains]
[wiki|HTH gntR-type domain] (aa 8-76) (according to UniProt)
Structure
[PDB|2WV0] ([protein|6D36D6360FE1CBFF5F64B2A6D1406405D6C6F7D5|nagR], corresponds to aa 83 ... 307 of YmfC, 30% identity)
[AF|O31761]
Paralogous protein(s)
[protein|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|gamR], [protein|6D36D6360FE1CBFF5F64B2A6D1406405D6C6F7D5|nagR], [protein|64CA75A26A08C534EC7ADFC4A6256F07F3D4BFB7|gmuR], [protein|412A1DBBE7F87765DEBEEAAE02A047636A354D5E|frlR], [protein|DC374E280C5A67C138D7EAC43AA66DA63CEF82B6|treR]
Expression and Regulation
Operons
genes
[gene|F9E0C645BCCD9A299E951D0574321C1FACA8DE4C|ymfC]
description
[pubmed|22383849]
genes
[gene|125325B485FBC60798EDA4B4BFB24C6FCBC4C513|spoIIIE]-[gene|F9E0C645BCCD9A299E951D0574321C1FACA8DE4C|ymfC]
description
[Pubmed|22383849]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|2507870], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
Biological materials
Mutant
MGNA-B115 (ymfC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1114 NBRP B. subtilis, Japan]
BKE16810 (Δ[gene|F9E0C645BCCD9A299E951D0574321C1FACA8DE4C|ymfC]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE16810 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTTCCCCTCCGTAAAC, downstream forward: _UP4_TAAAAACGGACGCCTGTATG
BKK16810 (Δ[gene|F9E0C645BCCD9A299E951D0574321C1FACA8DE4C|ymfC]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK16810 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTTCCCCTCCGTAAAC, downstream forward: _UP4_TAAAAACGGACGCCTGTATG
References
Page visits: 1800
Time of last update: 2025-04-04 06:50:34
Author of last update: Melvin.boenninger