yydK
168
similar to transcriptional regulator ([wiki|GntR family])
locus
BSU_40130
Molecular weight
27.13 kDa
pI
5.19
function
unknown
product
transcriptional regulator ([wiki|GntR family])
essential
no
synonyms
yydK
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG2188 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
4,123,193 4,123,903
The protein
Protein family
[wiki|GntR family] of transcription factors
[wiki|Domains]
[wiki|HTH gntR-type domain] (aa 1-69) (according to UniProt)
Structure
[PDB|3BWG]
[AF|Q45591]
Paralogous protein(s)
[protein|64CA75A26A08C534EC7ADFC4A6256F07F3D4BFB7|gmuR], [protein|6D36D6360FE1CBFF5F64B2A6D1406405D6C6F7D5|nagR], [protein|DC374E280C5A67C138D7EAC43AA66DA63CEF82B6|treR], [protein|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|gamR], [protein|412A1DBBE7F87765DEBEEAAE02A047636A354D5E|frlR]
Expression and Regulation
Operons
genes
[gene|59EBB1812BA939110BC00ACE30057AB987E61B30|yydK]-[gene|D29C8EF4F415C68A90DF693AB1AC12537CE87298|yyzN]
description
[Pubmed|22383849]
Biological materials
Mutant
MGNA-B806 (yydK::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1805 NBRP B. subtilis, Japan]
BKE40130 ([gene|59EBB1812BA939110BC00ACE30057AB987E61B30|yydK]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE40130 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACGCATTCCTCATTTAT, downstream forward: _UP4_TAGGGCTCTTCACTACGGTA
BKK40130 ([gene|59EBB1812BA939110BC00ACE30057AB987E61B30|yydK]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK40130 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACGCATTCCTCATTTAT, downstream forward: _UP4_TAGGGCTCTTCACTACGGTA
References
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Time of last update: 2025-04-04 05:28:05
Author of last update: Melvin.boenninger