yabE
168
similar to cell wall binding protein
locus
BSU_00400
Molecular weight
47.55 kDa
pI
9.28
function
unknown
product
unknown
essential
no
synonyms
yabE
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG3584 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
48,629 → 49,942
The protein
[wiki|Domains]
G5 domain (aa 236-316) (according to UniProt)
Structure
[AF|P37546]
Expression and Regulation
Operons
genes
[gene|FEC200568646319DBFAD3A7E20AFA1CF5185EFB2|yabE]
description
[Pubmed|19047346]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|19047346], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
additional information
expression is negatively controlled by a cis-acting antisense RNA that is dependent on [protein|search|SigX] and [protein|search|SigM] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]
additional information
the mRNA is cleaved by [protein|BAB297D18F94FFA67B8D12A684AB4D1BCDFB4981|RNase III] [PubMed|26883633]
Biological materials
Mutant
MGNA-B905 (yabE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1904 NBRP B. subtilis, Japan]
BKE00400 (Δ[gene|FEC200568646319DBFAD3A7E20AFA1CF5185EFB2|yabE]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE00400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAGCTCAGTGTCCTCTT, downstream forward: _UP4_TAGTATATACTTATGTATTC
BKK00400 (Δ[gene|FEC200568646319DBFAD3A7E20AFA1CF5185EFB2|yabE]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK00400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAGCTCAGTGTCCTCTT, downstream forward: _UP4_TAGTATATACTTATGTATTC
labs
[wiki|John Helmann], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]
References
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Time of last update: 2024-12-01 22:01:27
Author of last update: Melvin.boenninger