ytiB

ytiB
168

similar to carbonic anhydrase

locus
BSU_30690
Molecular weight
20.97 kDa
pI
6.17
Protein length
187 aaSequenceBlast
Gene length
564 bpSequenceBlast
function
unknown
product
unknown
essential
no
ec
4.2.1.1
synonyms
ytiB
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0288 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,138,321 → 3,138,884
The protein
Catalyzed reaction/ biological activity
H+ + hydrogencarbonate --> CO2 + H2O (according to UniProt)
Protein family
beta-class carbonic anhydrase family (with [protein|E00889289B07BE78CC0C8E0962A55C3B14871E00|yvdA] and [protein|5D96DF2F32050BBCEC3811843398FE84DE88F6DF|ybcF], according to UniProt)
Structure
[PDB|1G5C] (from Methanobacterium thermoautotrophicum, 34% identity) [pubmed|11096105]
[AF|O34872]
Paralogous protein(s)
[protein|E00889289B07BE78CC0C8E0962A55C3B14871E00|yvdA]
[protein|5D96DF2F32050BBCEC3811843398FE84DE88F6DF|ybcF], Array
Expression and Regulation
Operons
genes
[gene|F942C0F4618FACEF35ACA629355BAC288556E7B6|ytiB]-[gene|FF61DC6CA162EEC191CDFC802E721FCBD32EC098|luxS]
description
[pubmed|22383849]
sigma factors
[protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB]: sigma factor, [Pubmed|26577401], in [regulon|protein:580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB regulon]
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[gene|F942C0F4618FACEF35ACA629355BAC288556E7B6|ytiB]->[gene|FF61DC6CA162EEC191CDFC802E721FCBD32EC098|luxS]

2024-10-10 07:36:07

Bzhu

72

75926799ff2de1c9324aa7def16e549e605f52eb

BC92809DA5580B1417FA8A9D54A26A0EA0ADDFD9

Biological materials
Mutant
MGNA-A293 (ytiB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/293 NBRP B. subtilis, Japan]
BKE30690 (Δ[gene|F942C0F4618FACEF35ACA629355BAC288556E7B6|ytiB]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE30690 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGTTCGTTGTCCCTTTCT,  downstream forward: _UP4_CTTATCGTAAACGGTTATAA
BKK30690 (Δ[gene|F942C0F4618FACEF35ACA629355BAC288556E7B6|ytiB]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK30690 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGTTCGTTGTCCCTTTCT,  downstream forward: _UP4_CTTATCGTAAACGGTTATAA
References
26577401,11096105

F942C0F4618FACEF35ACA629355BAC288556E7B6

Page visits: 2347

Time of last update: 2024-10-12 05:25:22

Author of last update: Melvin.boenninger