yxkH
168
similar to polysaccharide deacetylase
locus
BSU_38800
Molecular weight
31.26 kDa
pI
7.8
function
unknown
product
unknown
essential
no
synonyms
yxkH
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG0726 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
3,983,187 → 3,984,026
The protein
Protein family
[wiki|polysaccharide deacetylase family] (according to UniProt)
[wiki|Domains]
[wiki|NodB homology domain] (aa 119-279) (according to UniProt)
Structure
[PDB|1HD5] (from B. cereus, 30% identity)
[AF|P94361]
[wiki|Localization]
cell membrane (according to UniProt)
Expression and Regulation
Operons
genes
[gene|F66D9DFE457E2ADADD72DE7B99CD2FEE35C6462F|yxkH]
description
[Pubmed|10746760]
sigma factors
[protein|7024E4162A6D827069F882FDEACA696EBC05DD40|sigD]: sigma factor, [Pubmed|26577401], in [regulon|protein:7024E4162A6D827069F882FDEACA696EBC05DD40|sigD regulon]
Biological materials
Mutant
MGNA-B742 (yxkH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1741 NBRP B. subtilis, Japan]
BKE38800 (Δ[gene|F66D9DFE457E2ADADD72DE7B99CD2FEE35C6462F|yxkH]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE38800 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGTTCTCCTGCTTTCTG, downstream forward: _UP4_TCAATGAAATAAAAAAAGGC
BKK38800 (Δ[gene|F66D9DFE457E2ADADD72DE7B99CD2FEE35C6462F|yxkH]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK38800 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGTTCTCCTGCTTTCTG, downstream forward: _UP4_TCAATGAAATAAAAAAAGGC
References
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Time of last update: 2024-12-30 14:59:51
Author of last update: Melvin.boenninger