yvdA
168
similar to carbonic anhydrase
locus
BSU_34670
Molecular weight
21.57 kDa
pI
6.88
function
unknown
product
unknown
essential
no
synonyms
yvdA
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG0288 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
3,561,590 → 3,562,183
The protein
Catalyzed reaction/ biological activity
H+ + hydrogencarbonate --> CO2 + H2O (according to UniProt)
Protein family
beta-class carbonic anhydrase family (with [protein|5D96DF2F32050BBCEC3811843398FE84DE88F6DF|ybcF] and [protein|F942C0F4618FACEF35ACA629355BAC288556E7B6|ytiB], according to UniProt)
Structure
[PDB|1G5C] (from Methanobacterium thermoautotrophicum 40% identity) [pubmed|11096105]
[AF|O06983]
Paralogous protein(s)
[protein|F942C0F4618FACEF35ACA629355BAC288556E7B6|ytiB]
[protein|5D96DF2F32050BBCEC3811843398FE84DE88F6DF|ybcF], Array
Expression and Regulation
Operons
genes
[gene|E00889289B07BE78CC0C8E0962A55C3B14871E00|yvdA]-[gene|7028580E25DD6C1D49A14F29DDCC02012F94FED7|yvdB]
description
[Pubmed|22383849]
Biological materials
Mutant
MGNA-B632 (yvdA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1631 NBRP B. subtilis, Japan]
BKE34670 (Δ[gene|E00889289B07BE78CC0C8E0962A55C3B14871E00|yvdA]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE34670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTCCCATCCATATGATT, downstream forward: _UP4_TCATAAGGGAGGTTATAACA
BKK34670 (Δ[gene|E00889289B07BE78CC0C8E0962A55C3B14871E00|yvdA]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK34670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTCCCATCCATATGATT, downstream forward: _UP4_TCATAAGGGAGGTTATAACA
References
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Time of last update: 2024-10-11 20:51:04
Author of last update: Melvin.boenninger