ydhD
168
spore coat peptidoglycan hydrolase
locus
BSU_05710
Molecular weight
48.80 kDa
pI
9.07
function
unknown
product
spore coat glycosylase
essential
no
synonyms
ydhD
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG3858 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
616,672 → 617,934
The protein
Protein family
[wiki|Glycosyl hydrolase 18 family] (according to UniProt)
Chitinase class II subfamily (with [protein|77BEC74867422AA225A1F12AD63464656DBDCBE8|yaaH], according to UniProt)
[wiki|Domains]
contains two N-acetylglucosamine-polymer-binding [wiki|LysM domain]s at the N-terminus [Pubmed|18430080]
[wiki|glycoside hydrolase family 18 domain ] (aa 120 to 400)
2 [wiki|LysM domain]s (aa 2-45, aa 48-92) (according to UniProt)
Structure
[PDB|3CZ8]
[AF|O05495]
Paralogous protein(s)
[protein|77BEC74867422AA225A1F12AD63464656DBDCBE8|yaaH]
[wiki|Localization]
spore wall (according to Swiss-Prot)
Expression and Regulation
Operons
genes
[gene|DFA0BFED9FC2C47ABAA2284514CE2F81BD9EDFEF|ydhD]
description
[Pubmed|11011148]
regulation
expressed during sporulation ([protein|search|SigE])
sigma factors
[protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|sigE]: sigma factor, [Pubmed|11011148,15699190], in [regulon|protein:3CB24D493B3282278B7DC61CE3C793DFA815F9E2|sigE regulon]
Biological materials
Mutant
MGNA-C179 (ydhD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2177 NBRP B. subtilis, Japan]
BKE05710 (Δ[gene|DFA0BFED9FC2C47ABAA2284514CE2F81BD9EDFEF|ydhD]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05710 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTTAACCCCCATTATT, downstream forward: _UP4_TAAAAAAAGACACCAGAGCT
BKK05710 (Δ[gene|DFA0BFED9FC2C47ABAA2284514CE2F81BD9EDFEF|ydhD]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05710 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTTAACCCCCATTATT, downstream forward: _UP4_TAAAAAAAGACACCAGAGCT
References
Reviews
Original Publications
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Time of last update: 2025-04-04 02:52:48
Author of last update: Jstuelk