ydbO
168
similar to cation efflux system
locus
BSU_04540
Molecular weight
31.33 kDa
pI
6.23
function
unknown
product
unknown
essential
no
synonyms
ydbO
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG0053 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
506,866 → 507,738
The protein
Protein family
[wiki|Cation diffusion facilitator (CDF) transporter (TC 2.A.4) family] (according to UniProt)
Structure
[PDB|5VRF] (from Shewanella oneidensis, 26% identity) [pubmed|29507252]
[AF|P96610]
Paralogous protein(s)
[protein|72BF9B934CB5800E156263FF377DED0AD2E920A9|mneS], [protein|28C7CFE5701F6920652BE1973DC7A15D7C088E35|mneP]
[wiki|Localization]
cell membrane (according to UniProt)
Expression and Regulation
Operons
genes
[gene|D52111E81E9233DABAEFCAF6217145CF6A7F3961|ydbO]
description
[Pubmed|22383849]
Biological materials
Mutant
MGNA-C120 (ydbO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2118 NBRP B. subtilis, Japan]
BKE04540 (Δ[gene|D52111E81E9233DABAEFCAF6217145CF6A7F3961|ydbO]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE04540 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGAATACCAGCCTCCAT, downstream forward: _UP4_ATAAAATAAGGCTGTTTAAC
BKK04540 (Δ[gene|D52111E81E9233DABAEFCAF6217145CF6A7F3961|ydbO]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK04540 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGAATACCAGCCTCCAT, downstream forward: _UP4_ATAAAATAAGGCTGTTTAAC
References
Research papers
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Time of last update: 2024-12-19 15:28:26
Author of last update: Melvin.boenninger