yxiD

yxiD
168

LXG toxin, non-specific metal-dependent RNase

locus
BSU_39300
Molecular weight
64.13 kDa
pI
9.4
Protein length
Gene length
function
competetion with other bacteria in biofilms
product
LXG toxin, RNase
essential
no
ec
null
synonyms
yxiD

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG5444 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
4,036,784 → 4,038,493
Phenotypes of a mutant
the mutant is outcompeted by wild type cells in biofilms [pubmed|34280190]
The protein
[wiki|Domains]
[wiki|LXG domain] (aa 1-235) (according to UniProt)
Structure
[AF|P42296]
[wiki|Localization]
secreted
secretion and delivery requires [protein|50D2A03E2D7B5D461540FD157377E0D37F771888|WXG100] and the T7SS ([protein|3CC3E197848E9688413C15CEA7DDCF0A7120A920|yukD]-[protein|3FE4A91C7D0B43C8704391F2F9493852B3AED9B0|essB]-[wiki|YukB]-[wiki|YueB]-[wiki|YueC]-[protein|B258CA26B0EC2310475FCCD67F1F196857FC0004|yueD]) [pubmed|34280190]
Expression and Regulation
Operons
genes
[gene|75B0239578C92D4F3B298CBB077635BF5567C590|yxiB]-[gene|F44437883F39E5240D36340A7DD07803C5090ABB|yxiC]-[gene|BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991|yxiD]-[gene|0DAFBDDC5E41592D06F97D404E75AF14B6783729|yxxD]-[gene|2710D9FD5FA50E09B4E482C13140F69B13C71861|yxxE]
description
[Pubmed|22383849,7883710,10746760]
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[gene|75B0239578C92D4F3B298CBB077635BF5567C590|yxiB]→[gene|2710D9FD5FA50E09B4E482C13140F69B13C71861|yxxE]

2024-10-10 18:26:30

Jstuelk

76

6811039ab2839b666e83f7f56b9c32b670963970

12030EE6982066B43F7653DACDC2A8EF2C3924DB

Biological materials
Mutant
MGNA-B717 (yxiD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1716 NBRP B. subtilis, Japan]
BKE39300 (Δ[gene|BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991|yxiD]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE39300 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAATCCCTTGTCCTCCCGCG,  downstream forward: _UP4_AAATGAGTTATAATTTTATA
BKK39300 (Δ[gene|BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991|yxiD]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK39300 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAATCCCTTGTCCTCCCGCG,  downstream forward: _UP4_AAATGAGTTATAATTTTATA
References
7883710,10746760,22200572,34280190,36154281,36815589

BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991

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Time of last update: 2024-10-13 22:08:30

Author of last update: Jstuelk