ybgF
168
uncharacterized amino acid permase
locus
BSU_02400
Molecular weight
50.78 kDa
pI
9.6
function
unknown
product
unknown
essential
no
synonyms
ybgF
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG0833 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
260,123 → 261,535
The protein
Protein family
[wiki|amino acid-polyamine-organocation (APC) superfamily] (according to UniProt)
Structure
[PDB|5OQT] (arginine transporter from Geobacillus kaustophilus, 23% identity) [pubmed|29416041]
[AF|O31462]
Paralogous protein(s)
[protein|C7FEA1D9C7C96C39CEE83CE3F13D412DE6AFE10E|ydgF], [protein|CE4A49F5CCC2D36C5CE5AD7AE7F0A70F2D4F425C|aapA], [protein|1594BA83CED2DA9F86C1CE2A0DC6E1C9B665EACB|gabP], [protein|219586A3F378DC38EA076FD39B99D41136BDE722|alaP], [protein|423AEC9D260BE53AD22851D999244B89BEB3E84D|hutM], [protein|8C4A8961B2514A8AD531AFB104B10C0797D02AC2|yvbW], [protein|9AD0E43119BDC65D5F67CE55CD9417E1E6BAE058|aimB], [protein|9BFB16C12B31ABD70BBB921BCB9E4201E3BDC92D|rocC], [protein|B46A8BCEC56E6252712E30F8BF8DA6B836FDE2F6|rocE]
[wiki|Localization]
cell membrane (according to UniProt)
Expression and Regulation
Operons
genes
[gene|B6A920650919D5BBBD75CCA58C30A0D8ECE64DA3|ybgF]
description
[pubmed|22383849]
genes
[gene|577723B2BF662A44D55DC84444ED64276D8DED17|ybgG]-[gene|B6A920650919D5BBBD75CCA58C30A0D8ECE64DA3|ybgF]
description
[pubmed|22383849]
Biological materials
Mutant
GP3040 Δ[gene|B6A920650919D5BBBD75CCA58C30A0D8ECE64DA3|ybgF]::''cat'', available in [wiki|Jörg Stülke]'s lab [pubmed|32743959]
MGNA-B940 (ybgF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1939 NBRP B. subtilis, Japan]
BKE02400 (Δ[gene|B6A920650919D5BBBD75CCA58C30A0D8ECE64DA3|ybgF]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE02400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTTTTCCAACTTTCTA, downstream forward: _UP4_TAAAAAGAACCTGCCTCCGG
BKK02400 (Δ[gene|B6A920650919D5BBBD75CCA58C30A0D8ECE64DA3|ybgF]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK02400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTTTTCCAACTTTCTA, downstream forward: _UP4_TAAAAAGAACCTGCCTCCGG
lacZ fusion
pGP3819 (in [wiki|pAC7]), available in [wiki|Jörg Stülke]'s lab
References
Research papers
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Time of last update: 2024-12-21 04:07:27
Author of last update: Jstuelk