ypjD

ypjD
168

putative pyrophosphatase

locus
BSU_22500
Molecular weight
12.83 kDa
pI
4.95
Protein length
Gene length
function
unknown
product
putative pyrophosphatase
essential
no
synonyms
ypjD, jojD

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1694 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
2,360,155  2,360,490
The protein
Structure
[PDB|2GTA]
[AF|P42979]
[wiki|Localization]
cytoplasm (according to Swiss-Prot)
Expression and Regulation
Operons
genes
[gene|A828298EA2A002538876FBA6113648AAD9C4C317|ypjD]-[gene|5AB90032031653A913E15B26B3E1AE246E95AABF|dapB]-[gene|341F198B2BD4261B20C00181D084A7C5E33E39B3|mgsA]-[gene|60367F0396612C8A6491FD92A73B30BED7215506|bshB1]-[gene|187C78441816FC74B0FCCE34997E8AEC0A80B114|bshA]-[gene|4C4FA59FF5D100E941EF470C0C54E85681ADC74F|cca]-[gene|F761DBCE3429C99159F8F7CD8596FD9CF2D0589D|birA]
description
[Pubmed|20308541]
regulation
induced by diamide stess (thiol depletion) ([protein|search|Spx]) [Pubmed|23894131]
regulatory mechanism
[protein|2C6386E9A63F410558D168798D077DF91590F454|spx]: activation, [Pubmed|23894131], in [regulon|protein:2C6386E9A63F410558D168798D077DF91590F454|spx regulon]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|23894131], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
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[gene|A828298EA2A002538876FBA6113648AAD9C4C317|ypjD]→[gene|F761DBCE3429C99159F8F7CD8596FD9CF2D0589D|birA]

2024-11-10 14:18:41

ghost

77

53bf67b167bd77fe013a5e22a2f6ddcbf0c547e2

73042872A92944881DD9D94DF293F1857E4735FB

Biological materials
Mutant
BKE22500 ([gene|A828298EA2A002538876FBA6113648AAD9C4C317|ypjD]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE22500 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CACTGAACGAAACCTCCTAT,  downstream forward: _UP4_GAAGGAAAGTAGAGGAGATC
BKK22500 ([gene|A828298EA2A002538876FBA6113648AAD9C4C317|ypjD]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK22500 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CACTGAACGAAACCTCCTAT,  downstream forward: _UP4_GAAGGAAAGTAGAGGAGATC
lacZ fusion
pGP2437 (in [wiki|pAC7]), available in [wiki|Jörg Stülke]'s lab
References
Operon and expression
20308541,23894131

A828298EA2A002538876FBA6113648AAD9C4C317

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Time of last update: 2024-12-06 05:10:17

Author of last update: Melvin.boenninger