ypjD
168
putative pyrophosphatase
locus
BSU_22500
Molecular weight
12.83 kDa
pI
4.95
function
unknown
product
putative pyrophosphatase
essential
no
synonyms
ypjD, jojD
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG1694 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
2,360,155 2,360,490
The protein
Structure
[PDB|2GTA]
[AF|P42979]
[wiki|Localization]
cytoplasm (according to Swiss-Prot)
Expression and Regulation
Operons
genes
[gene|A828298EA2A002538876FBA6113648AAD9C4C317|ypjD]-[gene|5AB90032031653A913E15B26B3E1AE246E95AABF|dapB]-[gene|341F198B2BD4261B20C00181D084A7C5E33E39B3|mgsA]-[gene|60367F0396612C8A6491FD92A73B30BED7215506|bshB1]-[gene|187C78441816FC74B0FCCE34997E8AEC0A80B114|bshA]-[gene|4C4FA59FF5D100E941EF470C0C54E85681ADC74F|cca]-[gene|F761DBCE3429C99159F8F7CD8596FD9CF2D0589D|birA]
description
[Pubmed|20308541]
regulation
induced by diamide stess (thiol depletion) ([protein|search|Spx]) [Pubmed|23894131]
regulatory mechanism
[protein|2C6386E9A63F410558D168798D077DF91590F454|spx]: activation, [Pubmed|23894131], in [regulon|protein:2C6386E9A63F410558D168798D077DF91590F454|spx regulon]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|23894131], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
Biological materials
Mutant
BKE22500 ([gene|A828298EA2A002538876FBA6113648AAD9C4C317|ypjD]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE22500 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTGAACGAAACCTCCTAT, downstream forward: _UP4_GAAGGAAAGTAGAGGAGATC
BKK22500 ([gene|A828298EA2A002538876FBA6113648AAD9C4C317|ypjD]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK22500 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTGAACGAAACCTCCTAT, downstream forward: _UP4_GAAGGAAAGTAGAGGAGATC
lacZ fusion
pGP2437 (in [wiki|pAC7]), available in [wiki|Jörg Stülke]'s lab
References
Operon and expression
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Time of last update: 2024-12-06 05:10:17
Author of last update: Melvin.boenninger