cydC

cydC
168

[wiki|ABC transporter] required for expression of cytochrome bd (membrane protein)

locus
BSU_38740
Molecular weight
62.63 kDa
pI
8.51
Protein length
Gene length
function
required for expression of cytochrome bd
product
[wiki|ABC transporter]  (membrane protein)
essential
no
synonyms
cydC, yxkM

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG4988 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,975,088  3,976,791
The protein
Protein family
[wiki|ABC transporter superfamily] (according to UniProt)
[wiki|Domains]
has both a membrane-spanning and an ATP-binding domain [Pubmed|10092453]
[wiki|ABC transmembrane type-1 domain] (aa 15-298) (according to UniProt)
[wiki|ABC transporter domain] (aa 321-561) (according to UniProt)
Structure
[PDB|2HYD] (from Staphylococcus aureus, 27% identity) [pubmed|16943773]
[AF|P94366]
[wiki|Localization]
cell membrane [Pubmed|10092453]
Expression and Regulation
Operons
genes
[gene|C0459C0D45E31561D281E016D86CD80DCAF13357|cydA]-[gene|E66EAB3C172ED8D1D26C675A7338B8153FB66987|cydB]-[gene|A65576E0261F1950A0DAD72B2432D97AB3EB2AA5|cydC]-[gene|244BF9E397FDB0691FFAA8C9D419B0AE417CACE1|cydD]
description
[Pubmed|16207915]
regulation
expressed under anaerobic conditions ([protein|1E829D639BADDC6BDC9B5FB4C97A632A53FDDB24|resD]) [Pubmed|17322317]
expression
expression is heterogeneous [pubmed|35171018]
regulatory mechanism
[protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|ccpA]: repression, in [regulon|protein:E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|ccpA regulon]
[protein|B5EF521437323EF43F08E5EFDB5C798616CA499A|rex]: repression, [Pubmed|15231791], in [regulon|protein:B5EF521437323EF43F08E5EFDB5C798616CA499A|rex regulon]
[protein|1E829D639BADDC6BDC9B5FB4C97A632A53FDDB24|resD]: activation, [Pubmed|17322317], in [regulon|protein:1E829D639BADDC6BDC9B5FB4C97A632A53FDDB24|resD regulon]
sigma factors
[protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|sigF]: sigma factor, [PubMed|16497325], in [regulon|protein:CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|sigF regulon]
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[gene|C0459C0D45E31561D281E016D86CD80DCAF13357|cydA]→[gene|244BF9E397FDB0691FFAA8C9D419B0AE417CACE1|cydD]

2024-11-30 05:25:38

Jstuelk

109

B656DC522BB35F8FB6BB0C0BBC86CB05C20AB7C7

80895031322ED50D8EABA337924455145A6261DF

Biological materials
Mutant
MGNA-B747 (cydC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1746 NBRP B. subtilis, Japan]
BKE38740 ([gene|A65576E0261F1950A0DAD72B2432D97AB3EB2AA5|cydC]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE38740 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_ATATCGAAACAGGTCTTTTC,  downstream forward: _UP4_AAGGCACAACTGGGGGAAAG
BKK38740 ([gene|A65576E0261F1950A0DAD72B2432D97AB3EB2AA5|cydC]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK38740 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_ATATCGAAACAGGTCTTTTC,  downstream forward: _UP4_AAGGCACAACTGGGGGAAAG
References
16207915,17322317,10092453,15231791,9852001,24958725,15231791,17322317,16943773,39397791

A65576E0261F1950A0DAD72B2432D97AB3EB2AA5

Page visits: 4804

Time of last update: 2024-12-05 04:43:24

Author of last update: Jstuelk