ydeE
168
similar to transcription factor (AraC family)
locus
BSU_05170
Molecular weight
33.10 kDa
pI
7.22
function
unknown
product
unknown
essential
no
ec
null
synonyms
ydeE
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG3708 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
563,614 564,486
The protein
Protein family
[wiki|AraC family]
[wiki|Domains]
[wiki|HTH araC/xylS-type domain] (aa 8-106) (according to UniProt)
Structure
[PDB|1XS9] (from E. coli, N-terminal [wiki|HTH araC/xylS-type domain], 33% identity) [pubmed|15458404]
[AF|P96662]
[wiki|Localization]
cytoplasm (according to Swiss-Prot)
Biological materials
Mutant
MGNA-C081 (ydeE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2079 NBRP B. subtilis, Japan]
BKE05170 ([gene|A26310839513EE348585D57E623CD5213B5C768B|ydeE]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTATTTGGCCTCCTTTA, downstream forward: _UP4_TAATACGTTTTTCAATCAGA
BKK05170 ([gene|A26310839513EE348585D57E623CD5213B5C768B|ydeE]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTATTTGGCCTCCTTTA, downstream forward: _UP4_TAATACGTTTTTCAATCAGA
References
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Time of last update: 2025-04-07 12:59:00
Author of last update: Jstuelk