oxdC

oxdC
168

oxalate decarboxylase

locus
BSU_33240
Molecular weight
43.41 kDa
pI
5.1
Protein length
Gene length
function
unknown
product
oxalate decarboxylase
essential
no
ec
4.1.1.2
synonyms
oxdC, yvrK

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG2140 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,410,466  3,411,623
The protein
Catalyzed reaction/ biological activity
H+ + oxalate --> CO2 + formate (according to UniProt)
[wiki|Cofactors]
requires two Mn(II) centers for activity [Pubmed|24444454,19473032]
Structure
[PDB|1L3J] [pubmed|14871895]
[AF|O34714]
Modification
phosphorylated on Arg-12 [Pubmed|22517742]
Paralogous protein(s)
[protein|1568DD457FDD482B3C14954A95F62BE338CBD15D|oxdD]
[wiki|Localization]
cytoplasm (according to Swiss-Prot)
Expression and Regulation
Operons
genes
[gene|9793E952C985BA268AC28C907900A03F4E8A3253|oxdC]-[gene|07C35D58F6AF97F8E6BB75CF8E8B811BAFAB201B|rsiO]
description
[Pubmed|19047353]
regulation
induced by acidic growth conditions [Pubmed|19047353]
sigma factors
[protein|6359025A73C0BD313F5BCC6F56FE88B820902AAA|sigO]: sigma factor, [Pubmed|19047353], in [regulon|protein:6359025A73C0BD313F5BCC6F56FE88B820902AAA|sigO regulon]
[protein|AE8D4F07EFB17DA727D80229C3E72075928AA352|rsoA]: sigma factor, in [regulon|protein:AE8D4F07EFB17DA727D80229C3E72075928AA352|rsoA regulon]
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[gene|9793E952C985BA268AC28C907900A03F4E8A3253|oxdC]→[gene|07C35D58F6AF97F8E6BB75CF8E8B811BAFAB201B|rsiO]

2024-08-01 08:07:12

ghost

72

45fe15923d4d9abe55bc1d08f5e4cf8ec93e3aab

C45787333A7E680B1778F2A70AF5C84FB28484FA

Biological materials
Mutant
MGNA-B053 (yvrK::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1052 NBRP B. subtilis, Japan]
BKE33240 ([gene|9793E952C985BA268AC28C907900A03F4E8A3253|oxdC]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE33240 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGAAATGTTTCCTCCTTA,  downstream forward: _UP4_TAAAAGACTTGCGGCTTGCA
BKK33240 ([gene|9793E952C985BA268AC28C907900A03F4E8A3253|oxdC]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK33240 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGAAATGTTTCCTCCTTA,  downstream forward: _UP4_TAAAAGACTTGCGGCTTGCA
labs
[wiki|John Helmann], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]
References
Reviews
20464388
Original Publications
12056897,18573182,17269748,14871895,10960116,19047353,19473032,11546787,15583401,21264418,21782782,22404040,23734819,25526893,21277974,22517742,24444454,25186982,26641915,26744902,27797181,14871895,29620872,30806021,34097877,36482787,39339409

9793E952C985BA268AC28C907900A03F4E8A3253

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Time of last update: 2024-10-04 19:29:40

Author of last update: Jstuelk