ytrF

ytrF
168

[wiki|ABC transporter] (substrate-binding lipoprotein)

locus
BSU_30410
Molecular weight
48.26 kDa
pI
8.29
Protein length
Gene length
function
unknown
product
[wiki|ABC transporter]  (substrate-binding lipoprotein)
essential
no
synonyms
ytrF

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG4591 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,113,979  3,115,289
The protein
Protein family
[wiki|ABC-4 integral membrane protein family] (according to UniProt)
Structure
[AF|O35005]
[wiki|Localization]
cell membrane (via [protein|31977FDC549E45911C333623DCA3D8941A93D8FF|ytrC]-[protein|9C8233C48733A1E9271EE7AA1283EA9F446CF9DA|ytrD]) [Pubmed|10986249]
Expression and Regulation
Operons
genes
[gene|DCFA6025F7B4D7C5F6FB8107DDA6538CED33084D|ytrG]-[gene|6A074CE9AD98A2751A216A2EA8156ACE6FFC7280|ytrA]-[gene|BF81AD95FE6CF7662D012EF293C769E80C093D34|ytrB]-[gene|31977FDC549E45911C333623DCA3D8941A93D8FF|ytrC]-[gene|9C8233C48733A1E9271EE7AA1283EA9F446CF9DA|ytrD]-[gene|4FE6A51A0D9BBBF574EA2EF18B95B5BFC0A64CCB|ytrE]-[gene|9024AB63030C1934A954EE6A378CADBDC977E863|ytrF]
description
[Pubmed|10986249,21856850]
regulation
expressed early in the stationary phase [Pubmed|10986249]
regulatory mechanism
[protein|6A074CE9AD98A2751A216A2EA8156ACE6FFC7280|ytrA]: repression, [Pubmed|10986249,21856850], in [regulon|protein:6A074CE9AD98A2751A216A2EA8156ACE6FFC7280|ytrA regulon]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|10986249,21856850], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
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[gene|DCFA6025F7B4D7C5F6FB8107DDA6538CED33084D|ytrG]→[gene|9024AB63030C1934A954EE6A378CADBDC977E863|ytrF]

2024-10-07 18:35:24

Jstuelk

105

511c9f88e4f29ce72433096dbf0fd3dc5c038eeb

AE29C5AEECDD6994F28E6275F3C275A0539AF619

Biological materials
Mutant
GP2700 (Δ[gene|9024AB63030C1934A954EE6A378CADBDC977E863|ytrF]::''cat''), available in [wiki|Jörg Stülke]'s lab [pubmed|33897624]
GP3192 (Δ[gene|9024AB63030C1934A954EE6A378CADBDC977E863|ytrF]), available in [wiki|Jörg Stülke]'s lab [pubmed|33897624]
GP2646 Δ([gene|DCFA6025F7B4D7C5F6FB8107DDA6538CED33084D|ytrG]-[gene|6A074CE9AD98A2751A216A2EA8156ACE6FFC7280|ytrA]-[gene|BF81AD95FE6CF7662D012EF293C769E80C093D34|ytrB]-[gene|31977FDC549E45911C333623DCA3D8941A93D8FF|ytrC]-[gene|9C8233C48733A1E9271EE7AA1283EA9F446CF9DA|ytrD]-[gene|4FE6A51A0D9BBBF574EA2EF18B95B5BFC0A64CCB|ytrE]-[gene|9024AB63030C1934A954EE6A378CADBDC977E863|ytrF])::''ermC'', available in [wiki|Jörg Stülke]'s lab [pubmed|33897624]
MGNA-A132 (ytrF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/132 NBRP B. subtilis, Japan]
BKE30410 ([gene|9024AB63030C1934A954EE6A378CADBDC977E863|ytrF]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE30410 BGSC] and in [wiki|Jörg Stülke]'s lab,  [Pubmed|28189581], upstream reverse: _UP1_TCTTCTGATAAAATGAACCT,  downstream forward: _UP4_TAATGCGAACGAGCCGGCTG
BKK30410 ([gene|9024AB63030C1934A954EE6A378CADBDC977E863|ytrF]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK30410 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_TCTTCTGATAAAATGAACCT,  downstream forward: _UP4_TAATGCGAACGAGCCGGCTG
References
10986249,10092453,12399512,33450852,33897624

9024AB63030C1934A954EE6A378CADBDC977E863

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Time of last update: 2024-10-12 03:38:32

Author of last update: Jstuelk