ymaB
168
putative [wiki|Nudix hydrolase], has RNA pyrophosphohydrolase activity
locus
BSU_17400
Molecular weight
23.24 kDa
pI
4.51
function
unknown
product
unknown
essential
no
synonyms
ymaB
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG4112 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
1,872,128 1,872,748
The protein
Structure
[PDB|3E57] (from ''Thermotoga maritima'', 35% identity)
[AF|P50619]
Expression and Regulation
Operons
genes
[gene|1EA0595C74359A36B9161CFD531CA894C5E66E25|nrdI]-[gene|3B68CE8E9A35997B45E437A316996D585E43B76B|nrdE]-[gene|CD2D14FE9C10544E7C350167EBDBD941B898051D|nrdF]-[gene|8C2A08A8395B72CCC9D03A8154602B8F3B77A1AA|ymaB]
description
[Pubmed|16885274]
regulation
expressed under anaerobic conditions ([protein|search|ResD]) [Pubmed|16885274]
regulatory mechanism
[protein|1E829D639BADDC6BDC9B5FB4C97A632A53FDDB24|resD]: activation, [Pubmed|16885274], in [regulon|protein:1E829D639BADDC6BDC9B5FB4C97A632A53FDDB24|resD regulon]
[protein|FD4E988BB73F6476CCEA4C521F343D6F8CBA457F|nrdR]: repression, (predicted) [Pubmed|15949864], in [regulon|protein:FD4E988BB73F6476CCEA4C521F343D6F8CBA457F|nrdR regulon]
[protein|00BCAAE16576DC5426A652580C69A570FC7A1C2C|perR]: transcription repression, [Pubmed|27920297], in [regulon|protein:00BCAAE16576DC5426A652580C69A570FC7A1C2C|perR regulon]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|16885274], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
additional information
A [protein|search|ncRNA] is predicted between '[protein|search|ymzA]' and '[protein|search|nrdI]' [PubMed|20525796]
genes
[gene|93FA602438546FD6201FAB5BD19DB5DEB5965E48|ymzA]-[gene|1EA0595C74359A36B9161CFD531CA894C5E66E25|nrdI]-[gene|3B68CE8E9A35997B45E437A316996D585E43B76B|nrdE]-[gene|CD2D14FE9C10544E7C350167EBDBD941B898051D|nrdF]-[gene|8C2A08A8395B72CCC9D03A8154602B8F3B77A1AA|ymaB]
description
[Pubmed|22383849]
Biological materials
Mutant
MGNA-B380 (ymaB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1379 NBRP B. subtilis, Japan]
BKE17400 ([gene|8C2A08A8395B72CCC9D03A8154602B8F3B77A1AA|ymaB]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE17400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGGGTACTGCGTCCTCCT, downstream forward: _UP4_TAAAAAAACCCGGTTTCTCG
BKK17400 ([gene|8C2A08A8395B72CCC9D03A8154602B8F3B77A1AA|ymaB]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK17400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGGGTACTGCGTCCTCCT, downstream forward: _UP4_TAAAAAAACCCGGTTTCTCG
References
Page visits: 4290
Time of last update: 2024-10-13 21:36:32
Author of last update: Jstuelk