xynD

xynD
168

arabinoxylan arabinofuranohydrolase

locus
BSU_18160
Molecular weight
54.33 kDa
pI
8.03
Protein length
Gene length
function
arabinoxylan degradation
product
arabinoxylan arabinofuranohydrolase
essential
no
ec
3.2.1.55
synonyms
xynD

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG3507 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,944,113  1,945,654
The protein
Catalyzed reaction/ biological activity
Hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides (according to UniProt)
Protein family
[wiki|glycosyl hydrolase 43 family] (according to UniProt)
[wiki|Domains]
CBM6 domain (aa 382-511) (accordig to UniProt)
Structure
[PDB|3C7O] [Pubmed|18980579]
[AF|Q45071]
[wiki|Localization]
extracellular (signal peptide) [Pubmed|18957862]
Expression and Regulation
Operons
genes
[gene|8A02D56A403BF2E34B84DF0F44347AA2D091D831|xynD]-[gene|55D7F05F8592A53A58A032C78B847782E598B268|xynC]
description
[Pubmed|20817675]
regulatory mechanism
[protein|E5110D9C36E8C55AFD1419987B14A53232165F20|abrB]: repression, [Pubmed|20817675], in [regulon|protein:E5110D9C36E8C55AFD1419987B14A53232165F20|abrB regulon]
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[gene|8A02D56A403BF2E34B84DF0F44347AA2D091D831|xynD]→[gene|55D7F05F8592A53A58A032C78B847782E598B268|xynC]

2024-10-23 15:10:28

ghost

76

179840ced7890abaa560fcb50f8da015378141c8

F409E4A43C7A24F2BBD3C1E0B4EDB68D10C30B23

Biological materials
Mutant
BKE18160 ([gene|8A02D56A403BF2E34B84DF0F44347AA2D091D831|xynD]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE18160 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCACTTCACATCCTCCTT,  downstream forward: _UP4_TAGTACTCGTAATGGGACCG
BKK18160 ([gene|8A02D56A403BF2E34B84DF0F44347AA2D091D831|xynD]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK18160 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCACTTCACATCCTCCTT,  downstream forward: _UP4_TAGTACTCGTAATGGGACCG
References
18957862,20817675,18980579

8A02D56A403BF2E34B84DF0F44347AA2D091D831

Page visits: 2777

Time of last update: 2024-11-09 09:40:51

Author of last update: Melvin.boenninger