xynD
168
arabinoxylan arabinofuranohydrolase
locus
BSU_18160
Molecular weight
54.33 kDa
pI
8.03
function
arabinoxylan degradation
product
arabinoxylan arabinofuranohydrolase
essential
no
ec
3.2.1.55
synonyms
xynD
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG3507 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
1,944,113 1,945,654
The protein
Catalyzed reaction/ biological activity
Hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides (according to UniProt)
Protein family
[wiki|glycosyl hydrolase 43 family] (according to UniProt)
[wiki|Domains]
CBM6 domain (aa 382-511) (accordig to UniProt)
Structure
[PDB|3C7O] [Pubmed|18980579]
[AF|Q45071]
[wiki|Localization]
extracellular (signal peptide) [Pubmed|18957862]
Expression and Regulation
Operons
genes
[gene|8A02D56A403BF2E34B84DF0F44347AA2D091D831|xynD]-[gene|55D7F05F8592A53A58A032C78B847782E598B268|xynC]
description
[Pubmed|20817675]
regulatory mechanism
[protein|E5110D9C36E8C55AFD1419987B14A53232165F20|abrB]: repression, [Pubmed|20817675], in [regulon|protein:E5110D9C36E8C55AFD1419987B14A53232165F20|abrB regulon]
Biological materials
Mutant
BKE18160 ([gene|8A02D56A403BF2E34B84DF0F44347AA2D091D831|xynD]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE18160 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCACTTCACATCCTCCTT, downstream forward: _UP4_TAGTACTCGTAATGGGACCG
BKK18160 ([gene|8A02D56A403BF2E34B84DF0F44347AA2D091D831|xynD]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK18160 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCACTTCACATCCTCCTT, downstream forward: _UP4_TAGTACTCGTAATGGGACCG
References
Page visits: 2777
Time of last update: 2024-11-09 09:40:51
Author of last update: Melvin.boenninger