ytcP
168
polygalacturonan and rhamnogalacturonan [wiki|ABC transporter] (permease)
locus
BSU_30170
Molecular weight
31.54 kDa
pI
9.06
function
uptake of polygalacturonan and rhamnogalacturonan
product
polygalacturonan and rhamnogalacturonan [wiki|ABC transporter] (permease)
essential
no
synonyms
ytcP
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG0395 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
3,087,321 3,088,181
The protein
Protein family
[wiki|Binding-protein-dependent transport system permease family] (according to UniProt)
[wiki|CysTW subfamily] (according to UniProt)
[wiki|Domains]
[wiki|ABC transmembrane type-1 domain] (aa 69-271) (according to UniProt)
Structure
[PDB|4TQU] (from Sphingomonas sp., 36% identity) [pubmed|26235029]
[AF|P53561]
Paralogous protein(s)
[protein|0A7FF3E2747598AE0EE39183E8827879C4B11A80|lplC]
[wiki|Localization]
cell membrane [Pubmed|10092453]
Expression and Regulation
Operons
genes
[gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]-[gene|2D46E89AF6157B49BD443F47DB4A7258F22E8A24|ytcQ]
description
[Pubmed|22383849]
additional information
translation is likely to require [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|efp] due to the presence of several consecutive proline residues [PubMed|23239624,23239623]
Biological materials
Mutant
MGNA-B536 (ytcP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1535 NBRP B. subtilis, Japan]
BKE30170 ([gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE30170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAGTGAATGTGCGATAGCTC, downstream forward: _UP4_TAAAGAAATATGAAACGGAG
BKK30170 ([gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK30170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAGTGAATGTGCGATAGCTC, downstream forward: _UP4_TAAAGAAATATGAAACGGAG
References
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Time of last update: 2024-12-19 04:55:29
Author of last update: Jstuelk