ydbM
168
acyl-CoA dehydrogenase
locus
BSU_04520
Molecular weight
41.98 kDa
pI
5.72
function
sulphur metabolism
product
acyl-CoA dehydrogenase
essential
no
synonyms
ydbM
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG1960 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
505,152 506,297
The protein
Protein family
[wiki|Acyl-CoA dehydrogenase family] (according to UniProt)
[wiki|Cofactors]
FAD (according to UniProt) [Pubmed|21635694]
Structure
[PDB|3MXL] (from ''Micromonospora carbonacea var. africana'', 30% identity) [Pubmed|20866105]
[AF|P96608]
Expression and Regulation
Operons
genes
[gene|7B27ADD1CC7A9BCE0F602FA080B5FD0DB66380A0|ydbM]
description
[Pubmed|22383849]
regulation
repressed in the presence of cysteine ([protein|50930C56C27D22715620A350220E3C56ADB41020|cymR]) [Pubmed|16513748]
regulatory mechanism
[protein|50930C56C27D22715620A350220E3C56ADB41020|cymR]: repression, [Pubmed|16513748], in [regulon|protein:50930C56C27D22715620A350220E3C56ADB41020|cymR regulon]
Biological materials
Mutant
MGNA-C119 (ydbM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2117 NBRP B. subtilis, Japan]
BKE04520 ([gene|7B27ADD1CC7A9BCE0F602FA080B5FD0DB66380A0|ydbM]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE04520 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCGGCAGCCCCCCAGTT, downstream forward: _UP4_TAAAAAAAAGAGCCTTACCG
BKK04520 ([gene|7B27ADD1CC7A9BCE0F602FA080B5FD0DB66380A0|ydbM]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK04520 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCGGCAGCCCCCCAGTT, downstream forward: _UP4_TAAAAAAAAGAGCCTTACCG
References
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Time of last update: 2025-04-13 09:40:19
Author of last update: Jstuelk