rbsR

rbsR
168

transcriptional repressor of the ribose operon

locus
BSU_35910
Molecular weight
35.70 kDa
pI
5.58
Protein length
Gene length
function
regulation of ribose utilization
product
transcriptional repressor ([wiki|LacI family])
essential
no
synonyms
rbsR

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1609 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,701,411  3,702,391
The protein
Protein family
[wiki|LacI family]
[wiki|Domains]
[wiki|HTH lacI-type domain] (aa 1-56) (according to UniProt)
Structure
[PDB|3CTP] (from Alkaliphilus metalliredigens, 35% identity)
[AF|P36944]
Expression and Regulation
Operons
genes
[gene|77AEAC0F06B4D5F062D4A2740794B7BFDDA31096|rbsR]-[gene|C229BD2C00B169CF4A99482E65B3F749AD9D51D8|rbsK]-[gene|F0E6F191FAF8F279462B09BF1FE4C6C752A57803|rbsD]-[gene|AB4A686F62550F90F5BD8D27DAADC9C33F1DA1DB|rbsA]-[gene|F1258E31151E137A850811B0C851D473CEFFD43B|rbsC]-[gene|1D67888E79B09956F9258F4068546D8C67103549|rbsB]
description
[Pubmed|7921236]
regulation
expressed upon transition into the stationary phase ([protein|search|AbrB]) [Pubmed|7592460]
regulatory mechanism
[protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|ccpA]: repression, [Pubmed|7921236], in [regulon|protein:E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|ccpA regulon]
[protein|E5110D9C36E8C55AFD1419987B14A53232165F20|abrB]: activation, [Pubmed|7592460], in [regulon|protein:E5110D9C36E8C55AFD1419987B14A53232165F20|abrB regulon]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|7511775], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
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[gene|77AEAC0F06B4D5F062D4A2740794B7BFDDA31096|rbsR]→[gene|1D67888E79B09956F9258F4068546D8C67103549|rbsB]

2024-11-07 21:02:28

ghost

75

ecd23e67fb36c12e46381b0bbd805e52a3ac9a7b

9A76230F5BF071D52DFA7084300C0507E658DAA8

Biological materials
Mutant
BKE35910 ([gene|77AEAC0F06B4D5F062D4A2740794B7BFDDA31096|rbsR]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE35910 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAAAACAGCTCCTCCTTGTT,  downstream forward: _UP4_AAGACGACAAGAAAGGAAGA
BKK35910 ([gene|77AEAC0F06B4D5F062D4A2740794B7BFDDA31096|rbsR]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK35910 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAAAACAGCTCCTCCTTGTT,  downstream forward: _UP4_AAGACGACAAGAAAGGAAGA
References
16872404,16519689,22900538,7592460,12850135,7921236,7511775

77AEAC0F06B4D5F062D4A2740794B7BFDDA31096

Page visits: 4965

Time of last update: 2024-11-08 07:46:14

Author of last update: Melvin.boenninger