yocD
168
similar to immunity to bacteriotoxins
locus
BSU_19170
Molecular weight
36.25 kDa
pI
5.58
function
unknown
product
unknown
essential
no
ec
null
synonyms
yocD
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG1619 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
2,088,257 2,089,234
The protein
Protein family
peptidase S66 family (with [protein|C4F85F85F0C99A59145961E34B19D3AD03D2BC22|ykfA], according to UniProt)
Structure
[PDB|3SR3] (MccF from ''B. anthracis'', 33% identity, 66% similarity)
[AF|O35046]
Expression and Regulation
Operons
genes
[gene|CF8F38491E7DBDE77899D47E133B84DBB37C262C|yocC]-[gene|6B36C3B0FA04FBCB20C2C9AEA987DDD211E29629|yocD]
description
[Pubmed|22383849]
genes
[gene|6B36C3B0FA04FBCB20C2C9AEA987DDD211E29629|yocD]
description
[pubmed|22383849]
regulatory mechanism
[protein|E5110D9C36E8C55AFD1419987B14A53232165F20|abrB]: repression, [Pubmed|20817675], in [regulon|protein:E5110D9C36E8C55AFD1419987B14A53232165F20|abrB regulon]
Biological materials
Mutant
MGNA-B413 (yocD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1412 NBRP B. subtilis, Japan]
BKE19170 ([gene|6B36C3B0FA04FBCB20C2C9AEA987DDD211E29629|yocD]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE19170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAACCCTCCATCAATG, downstream forward: _UP4_TAATCAGCTTGTAAATTTTT
BKK19170 ([gene|6B36C3B0FA04FBCB20C2C9AEA987DDD211E29629|yocD]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK19170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAACCCTCCATCAATG, downstream forward: _UP4_TAATCAGCTTGTAAATTTTT
References
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Time of last update: 2024-10-14 00:25:01
Author of last update: Melvin.boenninger