ydgB
168
unknown
locus
BSU_05570
Molecular weight
9.32 kDa
pI
3.49
function
unknown
product
unknown
essential
no
synonyms
ydgB
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG5911 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
602,441 602,713
The protein
Structure
[AF|P96700]
Expression and Regulation
Operons
genes
[gene|68E585F6670539982E8E8032337DA2043C67FCC4|ydgB]-[gene|483587EB658850D786C3C95C02D419994FCC9F45|ydgA]-[gene|8F85E6DE353F29759301A463335BFC15F829E2D0|cotP]
description
[Pubmed|22383849]
regulation
expressed during sporulation ([protein|6FAD8804AA32B84819DDE57C0AF63F208FB9FFD1|sigKC]) [Pubmed|15699190]
regulatory mechanism
[protein|19228BAD44E6DA3DE908DC390FDF628C18D94E65|gerE]: repression, [Pubmed|9068633], in [regulon|protein:19228BAD44E6DA3DE908DC390FDF628C18D94E65|gerE regulon]
sigma factors
[protein|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|sigK]: sigma factor, [Pubmed|15699190], in [regulon|protein:24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|sigK regulon]
additional information
[protein|search|translation] is likely to require [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|efp] due to the presence of several consecutive proline residues [PubMed|23239624,23239623]
Biological materials
Mutant
MGNA-C173 (ydgB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2171 NBRP B. subtilis, Japan]
BKE05570 ([gene|68E585F6670539982E8E8032337DA2043C67FCC4|ydgB]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCCATCACACCCTTCCA, downstream forward: _UP4_ATTTTAGATTAAAGGGGTTT
BKK05570 ([gene|68E585F6670539982E8E8032337DA2043C67FCC4|ydgB]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCCATCACACCCTTCCA, downstream forward: _UP4_ATTTTAGATTAAAGGGGTTT
References
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Time of last update: 2024-12-21 15:27:01
Author of last update: Bzhu